Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00061 ATGTCGTGGATTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCAAGGAGGTTGGTCCTGTTGTCTCATTCAGATTAGTTATTGATCGAGAAACCGGGAAACCAAAAGGCTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGGAATCGAGAACAGGGTCGCGGTGGGCCTGGAATGACAGCAAATGTTGACCCTCAGAAACAAGTAGGCATCTCAGCTGTCCATGGGGAAGCTGTTCAACATCAACCTATTGGTCTTCATATCGCCATAACAGCCGCGGCTCTCATGACAGCAGCTCTAGGTGGTCCTCAGTCAGGCATCCAGTCAAATCAAAATGGATTGCAAAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTAACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAGCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGACTGGTTTCAGATCAAACCTCACAGTCTTTATTGAATGAAGGCCACCTGGGTCAGCCAGCATTGGTTCAAACTTTGTCTGGCCTACCTCCTTTTGGACAGAGCAAGTTGCAGTCTGGTCTGACACCTTACATTCAAGAAGGTCAAGTCAGCACCATACCTCATAATCCTTTAGCTCCTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGCCTCGAATTCCCCTTCAACATCATCCAAGCAACCCTGTTGTACAGCTGGGAACAATGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCATTGTCATTGGGCAGTTTGTCTGTCAGACCACCAATTCAATTGGCAACTACGACTGCTTTGAACCAGCAAATGCACGCCTCATTGCCACAGCATCCAGTACGTGTTGGAAGCTCAACTATTGGACATAATATTCAAATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGGCCCTCCATATCATCAGGTATTTCTCAGTTAAGTAGTAAGGAAGGTGATAGATCTTCTAAAATTCTTGAGGATTTAAATTGGGCCAAGACCAAGAGTACTAGTACACATTCAAACATGCCTTCTGGAGTTGAGAAAACAAACATGGTTCGTGATATTTCAGAATCTTTTACTCGCCCATCGAAGCTCATGAGATTGGATGAGGCAAGGAGCACCTCTCTTTCTGTGGGGATTTCAGACATTCCTGTCACCAATGGATCATCCCATGTTCTTGGAAGTACCTCATTACCTGTACCTGCAGCTCCTAAAACAGAAGTGCGGTACTCTGAGCAACAATCTTCTCAGTCTCAGCTTTCGCCTGATGTGGAATCTGTTTTACTGCAACAAGTATTGAATCTAACACCAGAGCAACTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGGTGCAGCCCTCATAA 1647 0.4572 MSWIGNIPYDATEEQLIEICKEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTANVDPQKQVGISAVHGEAVQHQPIGLHIAITAAALMTAALGGPQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLLNEGHLGQPALVQTLSGLPPFGQSKLQSGLTPYIQEGQVSTIPHNPLAPNQLTAHPKPPVQPRIPLQHHPSNPVVQLGTMSGQSNLMLPSVRPLSLGSLSVRPPIQLATTTALNQQMHASLPQHPVRVGSSTIGHNIQMVRPDASFQPGPSISSGISQLSSKEGDRSSKILEDLNWAKTKSTSTHSNMPSGVEKTNMVRDISESFTRPSKLMRLDEARSTSLSVGISDIPVTNGSSHVLGSTSLPVPAAPKTEVRYSEQQSSQSQLSPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQVQPS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00061 548 Pfam Transcription termination and cleavage factor C-terminal 510 542 IPR026896 GO:0031124
Sebi85g00061 548 FunFam Cleavage stimulating factor 64 148 223 - -
Sebi85g00061 548 CDD RRM_CSTF2_RNA15_like 3 76 - -
Sebi85g00061 548 SMART rrm1_1 1 74 IPR000504 GO:0003723
Sebi85g00061 548 SUPERFAMILY RNA-binding domain, RBD 3 95 IPR035979 GO:0003676
Sebi85g00061 548 MobiDBLite consensus disorder prediction 378 401 - -
Sebi85g00061 548 Gene3D - 3 105 IPR012677 -
Sebi85g00061 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 72 IPR000504 GO:0003723
Sebi85g00061 548 MobiDBLite consensus disorder prediction 77 100 - -
Sebi85g00061 548 Pfam Hinge domain of cleavage stimulation factor subunit 2 154 221 IPR025742 -
Sebi85g00061 548 MobiDBLite consensus disorder prediction 462 482 - -
Sebi85g00061 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 78 IPR000504 GO:0003723
Sebi85g00061 548 Gene3D - 141 223 - -
Sebi85g00061 548 MobiDBLite consensus disorder prediction 415 435 - -
Sebi85g00061 548 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 544 - -
Sebi85g00061 548 MobiDBLite consensus disorder prediction 462 478 - -
Sebi85g00061 548 MobiDBLite consensus disorder prediction 383 400 - -
Sebi85g00061 548 FunFam Cleavage stimulating factor 64 1 109 - -
Sebi85g00061 548 Gene3D - 504 546 IPR038192 -
Sebi85g00061 548 FunFam Related to Cleavage stimulation factor 501 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00061 Sebi-Chr85 931502 938731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00061 3 75 Eukaryotic Initiation Factors Gene Family AT2G23350 30.137 3.61e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00061 K14407 - gmx:100794399 829.706