Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00036 ATGGGTACGTCGAATCTACTCTTGTTTTTCTTCTCTCTGGTGAGTCTGTATGCTATGGCGGCTTCCAAGGTTGTGCTGATTGGGAACAATATCACTCTCTCATTCGATGATATTGAAGCTAATTTCGCTCCGACAGTCAAAGGGTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCGCTTGATGCATGTAAAGAACTGACAAATAAAGCTGAACAACTTCCAAATGCAAGTGCACCTTTTGTTTTAGTGATTAGAGGGGGATGTAGCTTTGAGGAAAAGGTCAGAAAGGCACAAGATGCTGGCTTCAAAGCTGCTATTGTCTATGACAATGAAGATGGTGGTGTCTTGGTTGCAATGGCTGGAAATTCTGCTGGTATAAGAATACATGCAGTATTTGTATCAAAAGCTTCGGGTGAAACACTAAAGAAATATGCTGGGTTGACTGATGTGGAAGTATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTTATTTCCCTACTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGTAGGCATCGCATAAGAAGAGAAAGGCCACGAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGCGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCTAGAACTGGCCTATGTGATCCACCACCTTCAGAATCTACACCTCTGCTCTCATCAACCCCAGCATCTATGGCATCCTCAGTCTTATCTTCTGTGAGGTCATCATTAGCTTCATCTTCAGCAATACAAATTACCCGGGGAATTTCACAATCTCCGTCCGTCTCTCGTAACCACTCTTTAGCTAGTACCCCTTGTGTTCAGCCATCTCTTAGGTCCTTCCGGCAATCCCCCTCCCTAAGCATCAGCCGTAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTTGCTTCCCACTTGAACTCACCGCGTTCCATTGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACTTGTCTCCTTACGTTCCAAGTCCAAGCAATGCTTCAGTGAGTTTTATGGGGTCATCCAGTCATCGACAGCATCCACTCCGTTATAGTGAGTCAGCCGCGAGCTTCTCACCATTTGCCTCTGCAAACTCCCTTCCAGAATGTTAA 1332 0.4467 MGTSNLLLFFFSLVSLYAMAASKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACKELTNKAEQLPNASAPFVLVIRGGCSFEEKVRKAQDAGFKAAIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGETLKKYAGLTDVEVWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLCDPPPSESTPLLSSTPASMASSVLSSVRSSLASSSAIQITRGISQSPSVSRNHSLASTPCVQPSLRSFRQSPSLSISRSSVDLRNASQRSLASHLNSPRSIGYPSLSSLNSRYLSPYVPSPSNASVSFMGSSSHRQHPLRYSESAASFSPFASANSLPEC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00036 443 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 158 290 - -
Sebi85g00036 443 Pfam PA domain 80 142 IPR003137 -
Sebi85g00036 443 SMART ring_2 234 275 IPR001841 -
Sebi85g00036 443 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Sebi85g00036 443 CDD PA_C_RZF_like 13 163 IPR044744 -
Sebi85g00036 443 SUPERFAMILY RING/U-box 224 282 - -
Sebi85g00036 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Sebi85g00036 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 281 - -
Sebi85g00036 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Sebi85g00036 443 Gene3D - 22 156 - -
Sebi85g00036 443 SUPERFAMILY PA domain 81 144 IPR046450 -
Sebi85g00036 443 Pfam Ring finger domain 233 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00036 Sebi-Chr85 515013 519535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00036 17 442 C3H Transcription Factor Family AT1G22670 48.741 2.73e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00036 K15692 - gmx:100791248 695.271