Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00033 ATGCAGAGGTACGGTTTTGCATCAAAATCTTCTTCAAAATGCAATACTGTTTTGCCATATCAAACCCCAAGGCTGAGGGACCACTACCTTCTTGGGAAGAAGCTTGGGCAAGGCCAATTTGGCACCACATACCTCTGCACCCACAAAGCCACAGGGAAACTCTATGCCTGCAAATCCATCCCAAAGAGGAAGCTTTTGTGCCAAGAGGATTATGATGATGTATGGAGAGAGATTCAGATCATGCACCATTTGTCAGAGCACCCAAATGTGGTCCAGATACAGGGAACCTATGAGGATTCTGTGTTTGTGCACCTGGTCATGGAGCTCTGTGCTGGGGGTGAACTTTTTGATAGGATAATTCAGAAGGGGCATTACAGCGAGAAAGAGGCTGTAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCATGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCTAAGATGAAGGCCACAGATTTTGGCCTCTCTGTGTTCTACAAGCCAGGACAAGCCTTTCATGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCAGAAGTGGATGTATGGAGTGCTGGTGTTATCCTATACATCTTGTTGAGTGGGGTCCCACCTTTCTGGGCTGAAACAGAATCAGGAATTTTCAGGCAGATTTTACATGGAGAGCTTGATTTTGTATCTGAACCATGGCCAAGTATCTCAGAAAGTGCTAAAGATTTGGTAAAACAGATGTTGGAAAGGGACCCTACGAAAAGACCTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATACAGTTGCCCCTGACAAACCTCTGGATTCAGCTGTTTTGACACGCCTAAAGCATTTTTCAGCAATGAATAAACTCAAGAAGATGGCACTGCGTGTCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGGTTAAAAGAGTTATTCAAGATGATTGACACAGACAACAGCGGGACCATAACTTTTGAGGAACTCAAGGATGGTTTGAAAAGTGTGGGCTCTAATCTCATGGAATCTGAAATTAAATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTTGCTGCTACTCTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTAGTAAAGACTTCGGCCTAGGTGATGTACATCTGGATGAAATGATCAAAGAGATTGATCAAGACAATGATGGAAGAATTGATTATGGGGAGTTTGTAGCGATGATGAAAAAGGGCGATGTAGATGCTATTGGAAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGGAGTGAAAGAATCTTCTTGA 1494 0.4317 MQRYGFASKSSSKCNTVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKATGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAKMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAETESGIFRQILHGELDFVSEPWPSISESAKDLVKQMLERDPTKRPSAHEVLCHPWIVDDTVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMDAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQASKDFGLGDVHLDEMIKEIDQDNDGRIDYGEFVAMMKKGDVDAIGRSRTMKGNLNFNIADAFGVKESS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00033 497 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Sebi85g00033 497 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi85g00033 497 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Sebi85g00033 497 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Sebi85g00033 497 ProSiteProfiles EF-hand calcium-binding domain profile. 440 471 IPR002048 GO:0005509
Sebi85g00033 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Sebi85g00033 497 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Sebi85g00033 497 Gene3D Transferase(Phosphotransferase) domain 1 115 297 - -
Sebi85g00033 497 FunFam CDPK-related kinase 3 21 189 - -
Sebi85g00033 497 SMART efh_1 370 398 IPR002048 GO:0005509
Sebi85g00033 497 SMART efh_1 334 362 IPR002048 GO:0005509
Sebi85g00033 497 SMART efh_1 406 434 IPR002048 GO:0005509
Sebi85g00033 497 SMART efh_1 440 468 IPR002048 GO:0005509
Sebi85g00033 497 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Sebi85g00033 497 SUPERFAMILY EF-hand 326 466 IPR011992 -
Sebi85g00033 497 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Sebi85g00033 497 CDD STKc_CAMK 28 286 - -
Sebi85g00033 497 ProSitePatterns EF-hand calcium-binding domain. 343 355 IPR018247 -
Sebi85g00033 497 CDD EFh 335 394 IPR002048 GO:0005509
Sebi85g00033 497 FunFam Calcium-dependent protein kinase 1 31 114 - -
Sebi85g00033 497 SUPERFAMILY Protein kinase-like (PK-like) 25 297 IPR011009 -
Sebi85g00033 497 Pfam EF-hand domain pair 335 395 IPR002048 GO:0005509
Sebi85g00033 497 Pfam EF-hand domain pair 405 466 IPR002048 GO:0005509
Sebi85g00033 497 Pfam Protein kinase domain 31 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi85g00033 497 FunFam Calcium-dependent protein kinase SK5 197 292 - -
Sebi85g00033 497 Gene3D - 298 470 - -
Sebi85g00033 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 461 - -
Sebi85g00033 497 ProSiteProfiles EF-hand calcium-binding domain profile. 330 365 IPR002048 GO:0005509
Sebi85g00033 497 FunFam Calcium-dependent protein kinase 1 295 469 - -
Sebi85g00033 497 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi85g00033 497 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00033 Sebi-Chr85 423294 427280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00033 15 493 EF-hand Containing Proteins AT1G35670 84.342 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi85g00033 Pkinase 6.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00033 K13412 - gmx:547887 920.613