Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00029 ATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCAATGAAAATTGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGTCATAAAGATAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAAGCCGTGACATCCAAAAACAAAATAATAGGAATGAGGAAGACACTTGTCTTCTACAAAGGACGTGCCCCTAATGGAAGGAAAACAGATTGGATTATGCATGAATATAGGCATCAAACCTCAGAACATGGCCCTCCTCAGGCAAGTTTTTTTTCATAA 444 0.4032 MESCVPPGFRFHPTEEELVGYYLKRKINSMKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNKIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQASFFS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00029 147 Gene3D NAC domain 14 144 IPR036093 GO:0003677|GO:0006355
Sebi85g00029 147 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 135 - -
Sebi85g00029 147 FunFam Nac domain-containing protein 86 14 145 - -
Sebi85g00029 147 SUPERFAMILY NAC domain 3 138 IPR036093 GO:0003677|GO:0006355
Sebi85g00029 147 ProSiteProfiles NAC domain profile. 5 147 IPR003441 GO:0003677|GO:0006355
Sebi85g00029 147 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00029 Sebi-Chr85 407728 408341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00029 1 142 NAC Transcription Factor Family AT1G71930 86.620 5.66e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi85g00029 NAM 3.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00029 - - gmx:100812904 295.049