Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi85g00021 | ATGGGTGATTCCTGCAGCTTCAACAAGGACATAACTTGCTCTGAAAAAACAGAGGATGGTGCTCACCTATCTGCAATGCTACTCAGCACCAATCTGGTATATTCATCAGTCCTCAATGCTGCTATTGAGCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCCCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGCCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGGCCCACTGAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCACAAGTTGGAAAACACTTTGTCCCTGATGACACTAAGGGCAACAATGCTTCATTCGTATCATATCTCTCTTATCCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAAGACATTGACCTGTTCAAGAAACTTCATGGAGTAACTGTGTACGAGTACATGGACAAGGATCCTAAACTTAGCTACATTTTTAACAAGGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAGTACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGTTTCGGAGTGATGGAGTTTTATAAATGA | 708 | 0.4209 | MGDSCSFNKDITCSEKTEDGAHLSAMLLSTNLVYSSVLNAAIELNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLPNRLDRMLRMLASYNILTFATRPTENGTTERVYGLSQVGKHFVPDDTKGNNASFVSYLSYPALLQVWLNFKEAVINEDIDLFKKLHGVTVYEYMDKDPKLSYIFNKAMADMSTKVMEKVLDTYTGFEGISTLVDVGGGNGQFLKTIISSFGVMEFYK | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi85g00021 | 235 | Pfam | Dimerisation domain | 37 | 90 | IPR012967 | GO:0046983 | |
| Sebi85g00021 | 235 | PANTHER | O-METHYLTRANSFERASE | 26 | 228 | IPR016461 | GO:0008168 | |
| Sebi85g00021 | 235 | Pfam | O-methyltransferase domain | 145 | 232 | IPR001077 | GO:0008171 | |
| Sebi85g00021 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 131 | 228 | IPR029063 | - | |
| Sebi85g00021 | 235 | SUPERFAMILY | "Winged helix" DNA-binding domain | 19 | 124 | IPR036390 | - | |
| Sebi85g00021 | 235 | Gene3D | Vaccinia Virus protein VP39 | 121 | 234 | IPR029063 | - | |
| Sebi85g00021 | 235 | Gene3D | - | 3 | 120 | IPR036388 | - | |
| Sebi85g00021 | 235 | FunFam | Caffeic acid 3-O-methyltransferase | 5 | 120 | - | - | |
| Sebi85g00021 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 26 | 235 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi85g00021 | Sebi-Chr85 | 323721 | 325133 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi85g00021 | 11 | 228 | Monolignol Biosynthesis Gene Families | AT5G54160 | 38.532 | 8.37e-45 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi85g00021 | - | - | gmx:100798347 | 303.908 |