Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00020 ATGGGTGATTCTTGCAGTTTCAGCAAGGACATAATTTGCTCTGAAAAAACAGGGGATGGTGCTCACCTATCTGCAATGCTACTCAGCACCAATCTGGTATATTCATCAGTCCTCAATGCTGCTATTGAGCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCTCAAATTGCCTCTAAGATGCCATTGCAACACCAACACAAAGACTTGCCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTTTCACAAGTTGGAAAACACTTTGTCCCTGATCCAAATAAGGGCAACATGGCTTCATTCGTTTCATATCTCTCTCAACCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAGGACATCGACCTGTTCAAGAAAATTTATGGAGTAAGTATGTATGAGTACATGGAAAAGGATCCAAAACTGAGCCACCTTTTTAACAGAGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAGTACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAGTTAATTTTGATCTCCCCCATGTCATTCAGCAAGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAATGTTCCACAGGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCGGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCGCCAAATGGGAAGGTTATTATTATGGAGTTCATAACACCTGAAGAACCAGAGCCAACTGAAGCATCCCAGCTTCTTACCACTATTGACAACCTCATGTTTTTCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAACTTCATGTTGCTTGTCTGGCCTTTTCTACTTTCGGAGTGATGGAATTTTGTAAATGA 1110 0.4108 MGDSCSFSKDIICSEKTGDGAHLSAMLLSTNLVYSSVLNAAIELNLFDIIAKATPPGSFISSSQIASKMPLQHQHKDLPNRLDRMLRMLASYNILTFATRTTQNGTTERVYGLSQVGKHFVPDPNKGNMASFVSYLSQPALLQVWLNFKEAVINEDIDLFKKIYGVSMYEYMEKDPKLSHLFNRAMADMSTKVMEKVLDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGVNFDLPHVIQQAPSLPGIEHVGGDMFANVPQGDAMLLKSICHNWSDEKCIEFLSNCHKALSPNGKVIIMEFITPEEPEPTEASQLLTTIDNLMFFTVGGRERTQKQYENLCKLSGFSKLHVACLAFSTFGVMEFCK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00020 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Sebi85g00020 369 FunFam Caffeic acid 3-O-methyltransferase 6 120 - -
Sebi85g00020 369 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Sebi85g00020 369 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Sebi85g00020 369 PANTHER O-METHYLTRANSFERASE 26 349 IPR016461 GO:0008168
Sebi85g00020 369 FunFam Caffeic acid O-methyltransferase 123 369 - -
Sebi85g00020 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 124 IPR036390 -
Sebi85g00020 369 Gene3D - 5 120 IPR036388 -
Sebi85g00020 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 369 IPR016461 GO:0008168
Sebi85g00020 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 366 IPR029063 -
Sebi85g00020 369 CDD AdoMet_MTases 209 302 - -
Sebi85g00020 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00020 Sebi-Chr85 313378 314835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00020 17 359 Monolignol Biosynthesis Gene Families AT5G54160 45.349 7.66e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00020 - - gmx:100798347 527.324