Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00018 ATGGGTGATTCCTGCAGTTTCAGCATGGACATAACTTGCTCTGAAAAAACAACAGAGGATGGTGCTCACCTATCAGCAATGCTACTCAGCACCAATCTTGTATATTCATCAGTCCTCAATGCCGCTATTGACCTCAATTTATTTGACATCATAGCCAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCCCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGTCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCACAAGTTGGAAAATTCTTAGTCCCTGATGAAAGTAAAGGCAACGTGGCATCTTACATATCATTTCTCTGTTATCCAGCACTTTTACAGGTTTGGTTGAACTTCAAGGAAGCGGTGATTGATCCAGACATTGACCTGTTCAAGCAGCTTCATGGAGTAACTGTGTATGAGTACATGCAAAAGGATCCTAAACTTAGCAACATTTTTAACAAGGCTATGGCAGATATGTCTGCAACATTGATGGAAAGAATACTTGAAATATATAATGGATTTGAGGGAATATCAACATTAGTTGATGTAGGAGGTGGGAATGGTGAAATTCTCAAAACCATTATCTCCAGGTATCCTTCAATAAAGGGAATTAATTTTGATCTGCCCCAAGTCATTCAACATGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACGGGGTGACGCCATAATACTAAAGAATGTATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAGGCTTTGTCACCAAATGGGAAAGTTATTGTCATGGAGTTCATATCGCCTGAAGAACCAGAGCCAACGGAAGCATCCCAGCTTGTTTCCACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAACTTCATGTCCCTTGTTGCGCCTTTTCTGGTTTCGGAGTGATGGAATTTTATAAATGGGATTAA 1119 0.4102 MGDSCSFSMDITCSEKTTEDGAHLSAMLLSTNLVYSSVLNAAIDLNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLSNRLDRMLRMLASYNILTFATRTTQNGTTERVYGLSQVGKFLVPDESKGNVASYISFLCYPALLQVWLNFKEAVIDPDIDLFKQLHGVTVYEYMQKDPKLSNIFNKAMADMSATLMERILEIYNGFEGISTLVDVGGGNGEILKTIISRYPSIKGINFDLPQVIQHAPSLPGIEHVGGDMFASVPRGDAIILKNVCHNWSDEKCIEFLSNCHKALSPNGKVIVMEFISPEEPEPTEASQLVSTIDNLMFITVGGRERTQKQYENLCKLSGFSKLHVPCCAFSGFGVMEFYKWD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00018 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 370 IPR016461 GO:0008168
Sebi85g00018 372 SUPERFAMILY "Winged helix" DNA-binding domain 21 125 IPR036390 -
Sebi85g00018 372 PIRSF O-mtase 4 370 IPR016461 GO:0008168
Sebi85g00018 372 Pfam Dimerisation domain 38 91 IPR012967 GO:0046983
Sebi85g00018 372 PANTHER O-METHYLTRANSFERASE 27 368 IPR016461 GO:0008168
Sebi85g00018 372 Gene3D Vaccinia Virus protein VP39 180 359 IPR029063 -
Sebi85g00018 372 FunFam Caffeic acid 3-O-methyltransferase 5 121 - -
Sebi85g00018 372 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Sebi85g00018 372 Gene3D - 34 198 IPR036388 -
Sebi85g00018 372 FunFam Caffeic acid O-methyltransferase 124 370 - -
Sebi85g00018 372 CDD AdoMet_MTases 210 303 - -
Sebi85g00018 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 367 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00018 Sebi-Chr85 288296 289968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00018 16 370 Monolignol Biosynthesis Gene Families AT5G54160 44.663 1.61e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00018 - - gmx:100787536 554.288