Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00014 ATGGATCCAAAAGGAGGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTAACCTCATTAGGGAATGGATTACAGACAAATTTGTCTTCAGATCCACCCCCTTTCTATGGGGTCAGGATGGAAGCACCTTTCAAACAATTCAACCAATCATCTTCAACTCAGTCTGTTCTTCCAGGTGAATCTAACAAAGATATGAAGATCCCTAATCAAGAAAATTGTCCACTGGGTGACTCATCACAAACCAGTAAACTCCAAGATTGGGATCCCAGTGTGATGTTGAATAACCTCTCCTTCCTGGAAGATAAGATTCATCAGCTCCAGGGTCTAGTGCACTTGATTATTAATAAAAAGTGCCAACCTTTTGGACAACCTCAAGAACTCGTGACTCAGGAACAGCAGCTCATTACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACCGCAGGTAGTCTTCTCCCTTCTGTTAGGCACACTCTTACAAACACAAGTCCATTGGTTGGACAGCTTGGCCAGCTTCGTGGGATTAACCTTCCTTTCGGGTCAGGCTCAACTACTGGTATTCAGCCACAAAATAATAATGGAAATAAATTGTATGATCAGCCTATGCAGAGTGATCCACCTAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAGCAGGAGCATAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCATACGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCACCTCATACACATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGGGATGCAAATCTCCGAATGCACATGCGAGGCCACGGTGACGAGTACAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACTGGCTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGAAACAAGGATCACAAGAAATTTCAGCCTCTAAAGACCATTTTGTGTGTCAAAAATCACTACAAAAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCGATTCCTTTGGATGACAACAAAGGACTGACCGAGCCACATGATCACTGTGACACCAAAGAAAACAACAGTAAGGTTGGAAGTATGAGCTTCTGTTTTGGATCAAATCCTTCAAGTGAAATTGCAGTTCAAAACATCATGGATGTGAAAGGCAACATTGATGATCCTATCAGTTATTTCTCATCTTTGAACTTTGATGGCTGTAACTTTGGTGGGTTCAATGAATTCTCCCAACCTCCATTTGAAGACTCAGAAGGTTCTTTCTCCTTTCTCATGTCCGGATCGTTTAATTATCCTCCTAAATCTGGTGGTGAATCATGTTCTGATAATCTGTAG 1536 0.4186 MDPKGGLCANNWARSSSLTSLGNGLQTNLSSDPPPFYGVRMEAPFKQFNQSSSTQSVLPGESNKDMKIPNQENCPLGDSSQTSKLQDWDPSVMLNNLSFLEDKIHQLQGLVHLIINKKCQPFGQPQELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTSPLVGQLGQLRGINLPFGSGSTTGIQPQNNNGNKLYDQPMQSDPPNNCEMEQNYNMEEQEHKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGLTEPHDHCDTKENNSKVGSMSFCFGSNPSSEIAVQNIMDVKGNIDDPISYFSSLNFDGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYPPKSGGESCSDNL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00014 511 Gene3D Classic Zinc Finger 243 313 - -
Sebi85g00014 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Sebi85g00014 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 483 IPR044300 GO:0010044|GO:0010447
Sebi85g00014 511 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Sebi85g00014 511 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Sebi85g00014 511 SMART c2h2final6 259 281 IPR013087 -
Sebi85g00014 511 SMART c2h2final6 308 341 IPR013087 -
Sebi85g00014 511 SMART c2h2final6 346 368 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00014 Sebi-Chr85 235467 237002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00014 227 509 C2H2 Transcription Factor Family AT1G34370 70.486 1.81e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi85g00014 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00014 - - gmx:100170687 870.152