Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00009 ATGGAAACAGAACTGGAACTCCATGCAGGGACAGCGGTGGAGGTGCAAGAAGCTGATGTTGCAGACAAGATTGAAGGGGAATATAGTGATGCAGAGTTGGGTGATAGAAAGACAAAGAAAGAATGCTTCAAAGAAGTCATTACTATAAAATTCAGGAACTCAGATGTCTCGGATAAAGACCCCGTTCCGGAATCGACAGATCGGGGTGCTTGTGTGGTATTTGATACTACTCCAGCAGAACAGGTTGTCATTTTGTTGCAAAGGAATGTCCTTCGTAAGGGGACAAGATCTAAGAGTAGGAAGATGTCAACCAAGATGGTCAAGTGTCAACCAAGATGGATTCTTTGCAAGACATTTAACCAGAAACTAGAAGCTGGTCTTGGGGAGGCTTTTAAGGGTAGTTGGGAGCAAGAGAGTCTAAGGGGATTTTCATTTGATCCTGGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATACAAGCAGGAAGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCTTTTGCAGAATACGAAACTGAGGAGATTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACACTGTACAACAGAACACTTAAGTTTGCGATATCTGCGAGAGACAAAAGTACCCCTAATGGCTCTACTGCAATTACACCGACATCAAATTCTTCTCAAAGACCAAGGCCTTACCCTGTGGCAATAAATAATTCTGAAAATTTTCAGCACTCCACTAGGCTATCAACACCTGACCGATTTTCAGACTATTCAGCAAATTATTCACAAGTTCCTCCTCACCGTGTAACCGATCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGTCGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGTAATAGGTGGGTTGGTGCTTATTAA 969 0.4262 METELELHAGTAVEVQEADVADKIEGEYSDAELGDRKTKKECFKEVITIKFRNSDVSDKDPVPESTDRGACVVFDTTPAEQVVILLQRNVLRKGTRSKSRKMSTKMVKCQPRWILCKTFNQKLEAGLGEAFKGSWEQESLRGFSFDPGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISARDKSTPNGSTAITPTSNSSQRPRPYPVAINNSENFQHSTRLSTPDRFSDYSANYSQVPPHRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRNRWVGAY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00009 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 222 IPR000504 GO:0003723
Sebi85g00009 322 MobiDBLite consensus disorder prediction 223 263 - -
Sebi85g00009 322 SMART rrm1_1 148 218 IPR000504 GO:0003723
Sebi85g00009 322 Gene3D - 148 232 IPR012677 -
Sebi85g00009 322 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 148 317 - -
Sebi85g00009 322 SUPERFAMILY RNA-binding domain, RBD 148 225 IPR035979 GO:0003676
Sebi85g00009 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00009 Sebi-Chr85 177031 180153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00009 148 225 Eukaryotic Initiation Factors Gene Family AT1G49760 30.769 7.69e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00009 K12831 - gmx:100784532 308.916