Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi859g00023 ATGAAACTTTTCAGTGGCATGGAAGGTTGGGCTTTGGATCATCCAGCAACCAGAATGAATTCTGGTGCTGCTGTGTTAGCATTGCATCCTTTGGACAATGTGTTCAGAACAAGGGAGCCTCCTGATTTGAGGAGGACTTTGGAGAAAAGATCCAACCGGCCGGTACCTAAGGGCCACCTATTTCACAGAGACTTGAAGTGCGACAACATCTTTGTGAATGGAAACCAAGGAGAAGTTAAGATAGGAGACCTCGGTTTAGCAATTGTCATGCAACAACCAACTGCTCAAAGTGTTATTGGGACCCCTGAGTTTATGGCTCCAGAGCTATATGAAGAGGAATATAATGAACTTGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTCTTGAGTATCCCTACAGTGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCCCAAATTAAAGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCTGCAGAGGAGCTTCTTAAAGACCCATTTCTACAAGTTGAGAATCCAAAGGATCCAAACTTTTATCCTTTACAGTCACCAATTAAAACTCCAAGAGCTACAAATATGTCCAAGTCTGTCCAAAGGAAGAATAAGAACAATGAGTTTAGGTTGAAAGGAACTAAAAATGATGATAACTCAATATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTAAGGAATATACATTTCCTCTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCTCAGAGATGGTAGAACATTTGGAGCTGGCAGATCATGATGTGGCTTTCATAGCTGACCTTATTGATTACTTGATAATGAAACTTCTTCCTTGGTGGAAGCCCTCACCTGATCATAACACCAGTGGAGAATTAAGTCTTTATGGTGGGTCTACAAGTATAGATAGCCAAACCTTAATGGCATGCCCTTGGGGTTCTTTCCTAACTAGTATTCCCTCTGAACCAGTAATTGGTCAAGATGGCTTCTCTGGGCTCAATACAATTCCTAAAGAAGGTTTTGTGACTGCTGAGAAGAGCTGTGATTTCGAAAATGCTGATAATACTATTTCTGAGGCAGGTTGCTGTGCTGGGGAAGGCATTGTGATAAATGAATTCCCAAAGAACTCAGAGTCAATTTATGGAACATCTAATGGTGTGAGCTTATCAAGTAGCTATTCTTCTCTGTCTTCAACAGAAAAGGACATTGATATTGAGCTAAAGCTTGAACTTGATGCAATTGAGTCACAGTATCAGCATTGGATTGAAGAACTTACTAGAATGAAGTTGGAGGCATTGGAAGCCACCAAAAGGAGATGGATGGCCAAGAAGAAAGTAGCTGTTCATTGA 1425 0.4098 MKLFSGMEGWALDHPATRMNSGAAVLALHPLDNVFRTREPPDLRRTLEKRSNRPVPKGHLFHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQVENPKDPNFYPLQSPIKTPRATNMSKSVQRKNKNNEFRLKGTKNDDNSISLTLRIADTCGRVRNIHFLFYLDSDTAVSVASEMVEHLELADHDVAFIADLIDYLIMKLLPWWKPSPDHNTSGELSLYGGSTSIDSQTLMACPWGSFLTSIPSEPVIGQDGFSGLNTIPKEGFVTAEKSCDFENADNTISEAGCCAGEGIVINEFPKNSESIYGTSNGVSLSSSYSSLSSTEKDIDIELKLELDAIESQYQHWIEELTRMKLEALEATKRRWMAKKKVAVH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi859g00023 474 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi859g00023 474 Gene3D - 241 315 - -
Sebi859g00023 474 SMART serkin_6 2 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi859g00023 474 Gene3D Transferase(Phosphotransferase) domain 1 47 198 - -
Sebi859g00023 474 Pfam Protein kinase domain 60 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi859g00023 474 SUPERFAMILY Protein kinase-like (PK-like) 59 212 IPR011009 -
Sebi859g00023 474 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 39 313 - -
Sebi859g00023 474 Coils Coil 436 456 - -
Sebi859g00023 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 60 72 IPR008271 GO:0004672|GO:0006468
Sebi859g00023 474 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 243 299 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi859g00023 Sebi-Chr859 264979 269077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi859g00023 60 326 MAP Kinase Kinase Kinase AT1G49160 54.140 1.58e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sebi859g00023 Pkinase 1.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi859g00023 K08867 - gmx:100809602 515.383