Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi859g00020 ATGATGTTCAGAAACGGGCGTGAGAAATATGGTTGGAATGAGTTAGCAAAAGAGAAAGGGAAACCCTTGTGGGAATTAGTATTAGAACAATTTGATGACATATTGGTAAAGATACTTTTGGTTGCAGCCTTCATATCATTTCTTTTGGCTTATTTTCATGGAAGTGAATCAGGGGAGTCTGGATTTGAAGCTTATGTGGAGCCACTTGTGATCATTTTGATTTTAGTCCTTAATGCCATTGTTGGTGTTTGGCAAGAGAATAATGCTGAGAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGTGAATCTGGAAAAGTGTTAAGGGATGGTATTTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCATGTTGGTGATAAAGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAAACCTCAACTTTGAGAGTTGAACAAAGCTCATTAACAGGAGAAGCAATGCCTGTTCTCAAAGGGACCAATCCCATTTTCTTTGATGACTGTGAGTTGCAGGCCAAAGAAAACATGGTATTTGCAGGCACTACTGTTGTCAATGGGAGCTGTCTTTGTATTGTTATCACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAACAAATACATGAGGCTTCTTTGGAAGACAGTGACACTCCCTTGAAGAAGAAGCTGGATGAGTTTGGTGGCAGGCTCACCACTGCAATTGGGATAGTTTGCCTTGTTGTGTGGATTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTGGATGGATGGCCTACAAACATCCAATTTTCTTTTAAAAAATGCACATACTATTTCAAAATTGCTGTTGCCCTTGCTGTAGCTGCAATTCCAGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTTGGCACAAGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCAGATAAAACTGGTACTCTTACAACAAATCAAATGTCTGTGACAGAGTTTTTTACTTTGGGAGGGAAAACCACTGCTTATCGAGTCATTAGTGTTGAAGGCACAACTTATGATCCCAAGGATGGGGGAATTGTTGATTGGACTTGCTATAACATGGATGCCAACTTGGTAGCCATGGCAGAAATATGTGCTGTTTGTAATGATGCTGGGGTTTATTTTGATGGTCGCCTATATAGAGCTACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGAGTTCCAGATGTGAAGTCAAGGAATAAAATTCGTGATGCACAAGTTGCTGCCAACAACATGATGGATTGCAACACTGTGAAGTTAGGCTGTTGTGAGTGGTGGAATAAAAGATCCAAGAGGGTGGCTACATTGGAGTTCGATCGCATTAGGAAGTCAATGAGTGTTATTGTTCGTGAACCAGATGGGGAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGCCTACTGGAGCGTAGTTCACATGTCCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCAGGAGATGAGTTCAAAGGGACTACGTTGCTTGGGTTTGGCATATAAGGATGACTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCCCACAAGAAATTGCTGGATCCAACATGCTACTCATCCATTGAGAGTGATCTAGTTTTTGTTGGTGTTGTTGGCTTAAGAGATCCTCCTCGTGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGGAAGCTGGAATTAGAGTCATGGTAATAACTGGAGATAATAAGTCAACAGCTGAGGCTATTTGTAGGGAAATCAAATTGTTCTCTAGAGATGATGACCTTACATGGAAAAGTCTGACAGGTAAGGAATTCATGTCTCTTTCTCCTTCAGAGCAAGTTAAAATTTTGTCAAGACCTGGAGGCAAGGTTTTCTCTCGAGCTGAACCTAGACACAAGCAAGAAATTGTGAGACTACTCAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTCAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGCATAACTGGAACAGAGGTTGCAAAAGAAGCATCAGATATGGTGCTTGCAGATGACAACTTTAGTACCATTGTTTCAGCTGTTGCTGAGGGTCGTTCTATTTATAATAACATGAAAGCATTTATCAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCAATATTCTTGACTGCTGCACTGGGGATCCCAGAATGCATGATACCAGTACAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAAAAGTGATGATGCTCTTATAAGTTATTGGGTTCTTTTCCGTTATTTAGTAATTGGATCCTATGTGGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGGCACACAATTATAGAAATGTCACAGCTTCGAAACTGGGGGGAGTGTCACTCATGGTCTAATTTTACTGTGGCTCCATTTACGGTTGGTGGGGGTCGCTTGATCACATTTTCAAATCCTTGTGACTATTTTTCAGTTGGCAAAGTAAAGGCCATGACTCTGTCTCTCTCTGTCTTGGTGGCAATTGAGATGTTTAATTCTTTGAATGCCCTCTCAGAAGAAAATAGCTTGAGGAAATTGCCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAGTATCACTAGGACTCCATTGCCTCATACTCTACATCCCTTTTCTTGCGGATGTGTTTGGTGTTGCTCCACTTAGTTTGAATGAGTGGTTTTTGGTGATCCTAATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTGGTGAGGAGTCAAAGGAGAATGACAAAAGAGAAAGAAGCATGA 3063 0.4117 MMFRNGREKYGWNELAKEKGKPLWELVLEQFDDILVKILLVAAFISFLLAYFHGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGIFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPIFFDDCELQAKENMVFAGTTVVNGSCLCIVITTGMNTEIGKIQKQIHEASLEDSDTPLKKKLDEFGGRLTTAIGIVCLVVWIINYKNFISWDVVDGWPTNIQFSFKKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTAYRVISVEGTTYDPKDGGIVDWTCYNMDANLVAMAEICAVCNDAGVYFDGRLYRATGLPTEAALKVLVEKMGVPDVKSRNKIRDAQVAANNMMDCNTVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPDGENRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLQEMSSKGLRCLGLAYKDDLGEFSDYYADTHPAHKKLLDPTCYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREIKLFSRDDDLTWKSLTGKEFMSLSPSEQVKILSRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISYWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGINLVSDGHTIIEMSQLRNWGECHSWSNFTVAPFTVGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRKLPPWRNPWLLVAMSVSLGLHCLILYIPFLADVFGVAPLSLNEWFLVILISAPVILIDEILKLVVRSQRRMTKEKEA 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi859g00020 1020 PRINTS Sodium/potassium-transporting ATPase signature 949 973 - -
Sebi859g00020 1020 PRINTS Sodium/potassium-transporting ATPase signature 327 348 - -
Sebi859g00020 1020 Pfam Cation transporting ATPase, C-terminus 781 1007 IPR006068 -
Sebi859g00020 1020 SFLD p-type atpase 315 748 IPR044492 -
Sebi859g00020 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 1011 IPR023298 -
Sebi859g00020 1020 Gene3D - 331 741 IPR023214 -
Sebi859g00020 1020 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 760 1014 - -
Sebi859g00020 1020 SUPERFAMILY Calcium ATPase, transduction domain A 106 214 IPR008250 -
Sebi859g00020 1020 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1017 - -
Sebi859g00020 1020 Gene3D - 29 1009 - -
Sebi859g00020 1020 SMART Cation_ATPase_N_a_2 7 51 IPR004014 -
Sebi859g00020 1020 Pfam E1-E2 ATPase 100 314 - -
Sebi859g00020 1020 FunFam Calcium-transporting ATPase, putative 81 216 - -
Sebi859g00020 1020 Pfam haloacid dehalogenase-like hydrolase 331 710 - -
Sebi859g00020 1020 SFLD C1.7: P-type atpase like 315 748 - -
Sebi859g00020 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Sebi859g00020 1020 Gene3D - 344 595 IPR023299 GO:0000166
Sebi859g00020 1020 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 344 595 - -
Sebi859g00020 1020 FunFam Calcium-transporting P-type ATPase, putative 590 741 - -
Sebi859g00020 1020 FunFam Calcium-transporting ATPase, putative 185 330 - -
Sebi859g00020 1020 Pfam Cation transporter/ATPase, N-terminus 7 46 IPR004014 -
Sebi859g00020 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 341 592 IPR023299 GO:0000166
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 588 599 - -
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 610 620 - -
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 696 715 - -
Sebi859g00020 1020 PRINTS P-type cation-transporting ATPase superfamily signature 720 732 - -
Sebi859g00020 1020 Gene3D - 6 218 - -
Sebi859g00020 1020 NCBIfam HAD-IC family P-type ATPase 271 355 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi859g00020 1020 NCBIfam HAD-IC family P-type ATPase 669 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi859g00020 1020 SUPERFAMILY HAD-like 332 800 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi859g00020 Sebi-Chr859 239350 243637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi859g00020 7 1018 Primary Pumps ATPases(2) AT4G00900 79.528 0.0 1661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi859g00020 K01537 - gmx:100792952 1860.11