Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi859g00017 ATGGTTGTGGATGTGTTCACTTCTGGTCCTACCACAACTGTCATTTCTCAAATTATAGATACCATTGGTGAGTTCCTATATTATGCCAGTGATGTCCTTGTGAAGAAGGAGAGTTTTAAGGAACTTGCAGCTTACATGGAAAGAATTGTGCCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAAACATTCAACCGTGCCGTTGAGGTTATGAATGGTGAAATTAAAAATGCAAAGCTACTGGCTCAAGAATGCAGCAAGAAGAGCAAGGTTTATCTCCTAATGAATTGCAGGTCCATTGTTAAGCGCTTAGAAGACCACACAAAGGAGCTGAGCAAGGCTCTTGGTCTTCTTCCTTTAGCCACAGTAGGTCTTTCTGCAGGAATAATTGAAGAAATTGAAAAGCTATGTGACAATATGCAGGAAGCTGGGTTTAAGGCAGCTGTTGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTAATCGCTCCTATGCCAATAACTTGCTGATTCTCATTGCAGAGGCTGTTGGGATTACAAATGAGAGGTCAACAGTGAAGATGGAACTTGAAGAATTTAAGAAAGAAATTGAGAATGCCCGTGTTAAGAAGGAATTGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCATCACCTAGGGAAAGGGAACTCAAATACTTTGCCAAACGCCAATCTTTGGGTAATCAAATCTTGGAGCCTTTACAGTCATTTTATTGCCCCATCACCAAGGAGGTTATGGTGGACCCTGTAGAAACATCATCAGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGAAATACATTGTGTCCTCTGACCATGATTTCTTTAGATACATCAATTTTCAGACCTAATAAAACTTTGAAACAATCTATAGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCCACAGTAAAAGAAAAAATCCAGTCGGGAGACGATGATGAAGCGCTCCATGGTCTGAGAACTATCCAGGATTTGTGTGAACAAAAAGACCAACACAAGGAATGGGTGATACTGGAGAATTATATACCAGTTCTTATCCAAATTCTTGGTTCAAGAAACCGTGATATAAGGAATCATGCTCTTGCCATCCTTTGCATGCTGGCAAAGGATAATGAAGAGGCTAAGGAAAGAATTGCAACCGTTGATAATGCAATTGAATCAATTGTTCATTCTCTTGGACGTCGTATAGGGGAAAGGAAGTTAGCAGTGGCATTACTGCTCGAATTATCCAAATATGATTTAGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAGTGGGGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTAGAGAATCTTTCATGCTCTGATCAGAATGTTATTCAGATGGCAAAGGCAAATTATTTCAAACATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGATTATGGCCAGAACTTTAGCAGAGATGGAGTTAACCGACCACAATAAGGAGGCCTTGTTTGATGGTGGTGTACTAGCTCCTCTTCTTCACTTGTTCTTGCATAATGATCTTCAGTTGAAAACAGTGGCCGTCAAGGCTCTTCGGAATCTATCCAGTTTAAAGAAAAATGGACTAGAAATGATTAGACAAGGGGCTGCACGACCATTACTTGACCTCCTTTTCCATCGCAGCCTACCAACCTCAAGTTTGTGGGGAGATGTAGCAGCCATAACTATGCAACTTGCTACATCAACTATCTCTCAAGATGCCAAAACGCCAGTTTTATTACTAGAATCTGATGATGATGTTTTTAACCTCTTTGGTTTAATTAGTGTCACACAGCCTGATGTGCAACAAAACATTATCCGGACCTTTTATACCTTGTGTCAGTCGCAGTCACACTCGGCTTCATATATCAGGACCAAGCTAAATGAGTGCTCAGCTATACCAGAATTGGTTCGGTTGTGTGAGAATGAAAATCTAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAAGCCATCATACTGGAGAATGTTGATCAGAAATGCATCAATACTTTACTCCAGATCCTTAAATCTTCATCTGATGAAGAGGAACTACTTTCTGCCTTGGGAATAATATGCTATCTTCCAGAAAATAATCAGATAACTGAATGGCTTCTGGATGCTGGTGCACTGCCAGTCATTTATAAGCATATCCAAGAAGGGAGAGACAGGGATCTTCAAAGGAGTAATTTAGTAGAGAATGCCACTGGTGCCCTATGTCGTTTTACAGTTCCAACAAACTCAGAGTGGCAAAAGAGTGCAGCTGAAACTGGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGAACCTCCTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAATTTTCTAGAAGTTCAGTTCGGCTCAGCAGGCCAATTGCCAATCGCAAAGGACTATGTTGCTTCTCAGCTCCAGCAGAAATTAGCTGTGGAGTTCATGGAGGAATATGCACAGTCAAATCATCATTTTGCCTTTTGGAGGCTGAAGCAGTGGGACCACTCACAAGGACTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACTCATAATAAGATTTCTTGGTTCTTCCTCCCCTGGGTTGCAAGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTAGGCAAGTGGAGTTCAAACAAAAGTATGGAGCCTCGGCTCAAATGCCTCTAGTTGACTTAACACAGCGGGAGCAAACTGCATCCCTCGGTGCAACACCATGA 2970 0.4114 MVVDVFTSGPTTTVISQIIDTIGEFLYYASDVLVKKESFKELAAYMERIVPILKELRKEKVSDSETFNRAVEVMNGEIKNAKLLAQECSKKSKVYLLMNCRSIVKRLEDHTKELSKALGLLPLATVGLSAGIIEEIEKLCDNMQEAGFKAAVAEEEILEKIESGIRENNVNRSYANNLLILIAEAVGITNERSTVKMELEEFKKEIENARVKKELAEAMQMDQIIALLERADAASSPRERELKYFAKRQSLGNQILEPLQSFYCPITKEVMVDPVETSSGQTFERSAIEKWFAEGNTLCPLTMISLDTSIFRPNKTLKQSIEEWKDRNTMITIATVKEKIQSGDDDEALHGLRTIQDLCEQKDQHKEWVILENYIPVLIQILGSRNRDIRNHALAILCMLAKDNEEAKERIATVDNAIESIVHSLGRRIGERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSCSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMARTLAEMELTDHNKEALFDGGVLAPLLHLFLHNDLQLKTVAVKALRNLSSLKKNGLEMIRQGAARPLLDLLFHRSLPTSSLWGDVAAITMQLATSTISQDAKTPVLLLESDDDVFNLFGLISVTQPDVQQNIIRTFYTLCQSQSHSASYIRTKLNECSAIPELVRLCENENLNLRASAVKLFSCLVESCDEAIILENVDQKCINTLLQILKSSSDEEELLSALGIICYLPENNQITEWLLDAGALPVIYKHIQEGRDRDLQRSNLVENATGALCRFTVPTNSEWQKSAAETGIITVLVQLLESGTSLTKQRVAQSLAQFSRSSVRLSRPIANRKGLCCFSAPAEISCGVHGGICTVKSSFCLLEAEAVGPLTRTLGESDPGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRFLGSSSPGLQEKSLHALERIFRQVEFKQKYGASAQMPLVDLTQREQTASLGATP 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi859g00017 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Sebi859g00017 989 Gene3D - 874 986 IPR011989 -
Sebi859g00017 989 Pfam Armadillo/beta-catenin-like repeat 529 568 IPR000225 GO:0005515
Sebi859g00017 989 CDD RING-Ubox_PUB 262 303 IPR045210 -
Sebi859g00017 989 SMART arm_5 445 486 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 750 796 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 362 402 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 528 568 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 707 749 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 665 705 IPR000225 GO:0005515
Sebi859g00017 989 SMART arm_5 917 957 IPR000225 GO:0005515
Sebi859g00017 989 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Sebi859g00017 989 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Sebi859g00017 989 CDD MLKL_NTD 36 145 - -
Sebi859g00017 989 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 981 - -
Sebi859g00017 989 Gene3D - 336 628 IPR011989 -
Sebi859g00017 989 Gene3D - 12 126 IPR036537 GO:0007166
Sebi859g00017 989 SUPERFAMILY ARM repeat 337 956 IPR016024 -
Sebi859g00017 989 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Sebi859g00017 989 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Sebi859g00017 989 Coils Coil 192 219 - -
Sebi859g00017 989 Gene3D - 630 855 IPR011989 -
Sebi859g00017 989 SUPERFAMILY RING/U-box 249 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi859g00017 Sebi-Chr859 231066 236614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi859g00017 260 966 U-box Gene Family AT1G76390 28.571 2.08e-60 219