Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi859g00002 ATGTTAGACTCTAGTATGGAATATACATATTCAGCAGAAGAAGCTGCAGAGGCAGAAACTTACACTACCACCAGCAGCAACACTCCACCATCAGCTTCCATGAGAAAGAAGAAAATCAAGAACACAAGAAGGTTCAGTGATGACCAAATCAAATCATTGGAGTCTATGTTTGAGACTGAGACAAGGCTTGAACCAAGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATTTGGTTTCAGAACAAGAGAGCTAGATGGAAGTCTAAGCAACTTGAGAGAGACTACAGCATGCTTCTATCCAATTACAACAATTTGGCTTCACGGTTTGAAACTCTTAAGAAGGAAAAGCAAACATTACTAATACAGTTGCAAAAGCTGAATGGTCTAATACAGAAGCCATTAGAGGAGCAAAGTCAGAGTTCTACACAAGTTAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGCCACCATCAAATGTGAAGCTGAGGTAAAGCCAAGCCCATCCATGGAAAGATCAGAACATGTACTTAGTGTTCTTTCTGATGATGACACCAGTATAAAGGTAGAATATTTTGGCTTGGAAGATGAGCCTGGCCTTCTGAATTTTGGTGAGCATGCTGATGGTTCCTTGACATCACCAGAGGAATGGGGTGCTTTTGACTCCAATGATCTGTTAGGCCATTCAACAGGAGATTATCAATGGTGGGACTTTTGGTCCTGA 750 0.4173 MLDSSMEYTYSAEEAAEAETYTTTSSNTPPSASMRKKKIKNTRRFSDDQIKSLESMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSMLLSNYNNLASRFETLKKEKQTLLIQLQKLNGLIQKPLEEQSQSSTQVKAANSMDSESENGATIKCEAEVKPSPSMERSEHVLSVLSDDDTSIKVEYFGLEDEPGLLNFGEHADGSLTSPEEWGAFDSNDLLGHSTGDYQWWDFWS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi859g00002 249 SMART HOX_1 39 100 IPR001356 GO:0003677
Sebi859g00002 249 Pfam Homeobox associated leucine zipper 96 137 IPR003106 GO:0006355|GO:0043565
Sebi859g00002 249 Pfam Homeodomain 43 94 IPR001356 GO:0003677
Sebi859g00002 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 178 IPR045224 GO:0003700
Sebi859g00002 249 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Sebi859g00002 249 Gene3D - 23 106 - -
Sebi859g00002 249 FunFam Homeobox-leucine zipper protein ATHB-7 22 96 - -
Sebi859g00002 249 PRINTS Lambda-repressor HTH signature 76 92 IPR000047 GO:0003677
Sebi859g00002 249 PRINTS Lambda-repressor HTH signature 67 76 IPR000047 GO:0003677
Sebi859g00002 249 CDD homeodomain 40 97 IPR001356 GO:0003677
Sebi859g00002 249 MobiDBLite consensus disorder prediction 16 40 - -
Sebi859g00002 249 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Sebi859g00002 249 SUPERFAMILY Homeodomain-like 23 98 IPR009057 -
Sebi859g00002 249 MobiDBLite consensus disorder prediction 16 35 - -
Sebi859g00002 249 Coils Coil 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi859g00002 Sebi-Chr859 46541 47391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi859g00002 17 249 Homeobox Transcription Factor Family AT2G46680 49.219 4.79e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi859g00002 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi859g00002 K09338 - gmx:100797862 356.681