Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi858g00003 ATGGATGAAATTGAGGTCCCTGCCCTTTTCCTCTGCCCCATTTCCTTACAACTTATGAGAGACCCTGTCACAGTGTGCACAGGAATCACTTACGACAGAGAAAACATAGCAAGATGGTTATCTTCATACAGGAGCAATAGTTGCCCAGTTACTAAGCAACCACTCTTACACACAGATCTCACCCCAAACCACACTCTACACAGTTTGATCCAATCTTGGTGCACCCGTAATGGTTTGCAAGGAATTGAAAATGTTCCAATTCCAAAGCCAACCATTGACAAAACTCATGTTGTCAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCATTAGGAGGCTTCAATCTATTGCTCTTGAAAGCGAAAGTAACAAAATCTGTTTGGTTTCCGCAGGGGTACCAGATTTCTTGGCTTCAACCATGATGAACATAAGCCAAAAAGATTCAACTTTTATGAGTGAAGTTGCTATTGAAGTCCTTTTTCACCTGAATCCTTCAGGGGGTGAGCTTAAAAATCTGATAAACAAAGAGGGCATTCAATTTATTGAGTCTTTGTTTCAGGTCTTGAAGTTTGGGAATCATCAGTCTAAAGATTCAGAGAAGGCTTCGAAAGCAGCTTTGAAGCTTCTAGTGGAGTTGTGTTCATGGGGTAGAAACCGAGTCAAAGCAGTTGAGGGTGGTGTGGTTTTTGTCCTTGTTGAGGTTCTTCTTGAAGCATCTGAAAGAAGATTATGTGAACTCATGTTGATGGTTTTGGATAAACTCTGTGGGTGTGCAGAAGGAAGGGCTGAATTGTTGAAGCATGGAGCTGGAGTGGCCATTGTAGCCAAGAAAATTCTAAGGATTTCTCATGGGGCAAGTGATAGAGGGGTTAGAATTTTGGCTTCCATTTGTAGGTATTCAGCCACCCCTAGAGTCCTTCAAGAAATGTTGATATTTGGAGCTGTGTCAAAGTTGTGTTTGGTGCTTGAAGTTGAAGGCAGTTTCAAGGCAAAGGACAGAGCCAGGGAGATACTCAAATTGCACTCTGCCGTTTGGAAGAATTCCCCTTGTATTCCTCAGCATTTGCTTTCATCCTATCCATGA 1098 0.4235 MDEIEVPALFLCPISLQLMRDPVTVCTGITYDRENIARWLSSYRSNSCPVTKQPLLHTDLTPNHTLHSLIQSWCTRNGLQGIENVPIPKPTIDKTHVVKLLSEAKRFPDKQLKCIRRLQSIALESESNKICLVSAGVPDFLASTMMNISQKDSTFMSEVAIEVLFHLNPSGGELKNLINKEGIQFIESLFQVLKFGNHQSKDSEKASKAALKLLVELCSWGRNRVKAVEGGVVFVLVEVLLEASERRLCELMLMVLDKLCGCAEGRAELLKHGAGVAIVAKKILRISHGASDRGVRILASICRYSATPRVLQEMLIFGAVSKLCLVLEVEGSFKAKDRAREILKLHSAVWKNSPCIPQHLLSSYP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi858g00003 365 PANTHER WDSAM1 PROTEIN 3 199 IPR045185 GO:0061630
Sebi858g00003 365 Gene3D - 95 349 IPR011989 -
Sebi858g00003 365 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Sebi858g00003 365 CDD RING-Ubox_PUB 7 60 IPR045210 -
Sebi858g00003 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Sebi858g00003 365 SUPERFAMILY RING/U-box 3 82 - -
Sebi858g00003 365 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Sebi858g00003 365 SUPERFAMILY ARM repeat 97 343 IPR016024 -
Sebi858g00003 365 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi858g00003 Sebi-Chr858 41918 43125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi858g00003 1 365 U-box Gene Family AT3G52450 44.470 6.44e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi858g00003 - - gmx:100778012 482.256