Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi858g00001 ATGGCGACGTACTTTGATGGCAGCACTTCAGAAATCCAATCCTCTGCAGAAGGGTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGATGCTGCAGCGCAACACCCAACGCCCAACATGCTTCTCGTCAATCCCAATACTTCTCCTACTTCATCTCCTCCCGCCAACGCGCTTAACCTCTCCAATTTCTCCCACGCGCCCCCACCTCCATCACCTAATAATAATCACCAACAACACTTACTCTCATCAAACATCCTCGGATCCACCACCACCGACACTCCAAACCAACGCTCCTTCCTCGGACAACATGAAATCTCCGCCTTCCACGGCTTTCCCGCCGCCGCAAATAATCCTCGTCTCCACTATAACCTATGGGGTTCGATATTTAATCAAAACCCATCATCATCAGTCACAGCGGCAACGATAGTCATCCCGAATAATAATTCAGGATGTACTGGTGTTGCTGCTGTGGCTGCGGCGGGAGATCTCTCGCCGCAGATTGGTTTCCAAAGACAGCAGAGCTTGTCACTGAGCCTTTCACCGCAACAAACAGCTTTCAGGTCTTTCTCCGGCGAGATGGATGCTCCAGGAAGCCGTGGCGGACATGATGTGCGGGTTGTGGGGAATAGAATTTCGAGCATGCAGAGTGTTGTGTTGGGGTCCAATGGTGGAGGAAAGCAACAAGCTGGAGGAGTAGAATTAAGCACCGCACAGAGACAAGAGCTTCAGATGAAGAAGACCAAGCTTGTCACCATGCTCGATGAGGTAGAGTTAAGGTACCGACAGTATCACCAACAAATGCAAATGGTGATATCATCATTTGAGCAAGCAGCGGGATATGGGGCGGCAAAATCTTACACAGCTCTTGCCTTGAAGACAATCTCAAAGCAATTTCGATGTCTTAAAGATGCAATTGCTTCACAGATTAAGACAACTTGCAAGAGCTTAGGTGAAGATGATTGCTTAGGAGCTAAGGTAGAAGGTTCTAGACTGAGGTATGTTGATCACCATCTCCGACAACAACGAGCATTACAGCAACTTGGAATGATACAACACAATGCTTGGAGGCCCCAAAGAGGATTGCCTGAAAGAGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCTGACAAGGTTATGCTTGCAAAACAAACTGGACTTACCCGGAGTCAGGTTTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACATGGAGGAAATAAAGGATCAAGAGCAGAATAGTGGCTCACTGGATAACACAAACAAATCAAAAGATCAATCAAGCAAGGAGTTATGGTCAGGTGGTGCTAATACTACACATGAATCATCAGGTGCAATAAAACTTCATTCAAAAGCAGAAAGCTTCAACAACCAAAACACTTCTCCAACTGAGATCTCCAATTCCAATTCATTGTCAACATCTCCCATTGGAGGAGGAGGAGGATCCTTCCAATCCTTCCATCTTGCAGCAGGGTCATCTCCAAACAAGCCAAGAAGTAACTCTGAAATGCAAAACTCCCAAGGCAGCACACTTTCAGGAGAGACAGCCAATAGAGATGCACTCAACACAAAGTTTGACATTGAAAGGCACCCCAAAGATGGATACTCTTTAATGACAGCTGGCAATGAGAGTTATGGAGCATTCTCAATGGAAGATATTGGGAGGTTTAATGTCACTGATCAACAGCAGCAATTGGCTCCAAGGTTTCATGGAAATGGTGTTTCTCTAACTCTTGGACTTCCCCACAATGAGAATCTTTCTCTTTCAGCTGCAACACAGCATGGGTTTCTCTCACAGAACATGCATTTGGGAATGGGAAGCAATGAAAATGAGTTTTGTGCTATCAACAGTAATCAACCATCTTCTCATTCTGCCACCAGTTATGAAAGTATTGACATTCAAAACAGAAAAAGGTTTGCTGCTGCCCAGTTATTGAGAGATTTTGTGGCCTAA 2019 0.4537 MATYFDGSTSEIQSSAEGLQTLYLMNPNYVPYSDAAAQHPTPNMLLVNPNTSPTSSPPANALNLSNFSHAPPPPSPNNNHQQHLLSSNILGSTTTDTPNQRSFLGQHEISAFHGFPAAANNPRLHYNLWGSIFNQNPSSSVTAATIVIPNNNSGCTGVAAVAAAGDLSPQIGFQRQQSLSLSLSPQQTAFRSFSGEMDAPGSRGGHDVRVVGNRISSMQSVVLGSNGGGKQQAGGVELSTAQRQELQMKKTKLVTMLDEVELRYRQYHQQMQMVISSFEQAAGYGAAKSYTALALKTISKQFRCLKDAIASQIKTTCKSLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQNSGSLDNTNKSKDQSSKELWSGGANTTHESSGAIKLHSKAESFNNQNTSPTEISNSNSLSTSPIGGGGGSFQSFHLAAGSSPNKPRSNSEMQNSQGSTLSGETANRDALNTKFDIERHPKDGYSLMTAGNESYGAFSMEDIGRFNVTDQQQQLAPRFHGNGVSLTLGLPHNENLSLSAATQHGFLSQNMHLGMGSNENEFCAINSNQPSSHSATSYESIDIQNRKRFAAAQLLRDFVA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi858g00001 672 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Sebi858g00001 672 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Sebi858g00001 672 CDD homeodomain 359 420 IPR001356 GO:0003677
Sebi858g00001 672 Pfam Associated with HOX 224 310 IPR006563 -
Sebi858g00001 672 MobiDBLite consensus disorder prediction 431 538 - -
Sebi858g00001 672 SUPERFAMILY Homeodomain-like 360 426 IPR009057 -
Sebi858g00001 672 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 446 - -
Sebi858g00001 672 MobiDBLite consensus disorder prediction 47 68 - -
Sebi858g00001 672 SMART HOX_1 359 423 IPR001356 GO:0003677
Sebi858g00001 672 MobiDBLite consensus disorder prediction 47 83 - -
Sebi858g00001 672 Gene3D - 362 439 - -
Sebi858g00001 672 MobiDBLite consensus disorder prediction 435 538 - -
Sebi858g00001 672 SMART prehox3 193 311 IPR006563 -
Sebi858g00001 672 FunFam BEL1-like homeodomain protein 9 362 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi858g00001 Sebi-Chr858 14392 18172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi858g00001 236 672 Homeobox Transcription Factor Family AT2G35940 52.826 1.77e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi858g00001 POX 9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi858g00001 - - gmx:100786883 745.347