Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi857g00019 ATGTCAAGAGTAGAGTATTCAGAACAGCAATTCATGAAATGGGTCAATTTTGTTGGTAGCCTTAAACACACAGTTTTTAAGACTGCAAAAAATAAGCTCTTTGCTTCTTACACTTTGCACGTTGATAAGAATCCTGCTCTTGGTGATTTCACATCAATTCAAGAAGCCATTGATTCCCTTCCATCCATTAATCTTGTGAGAGTGATCATCAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAATATTCCAGCTTTGAAATCCTTCATAACAATAGAAGGAGCTGGTGCAGATAAAACCATTGTTCAATGGAATGACACTGCTCAAACACCTGGGCCAAGTGGGAGACCATTGGGAACCATTGGTTCAGCAACTTTTGCAGTGAATTCACTTTATTTCATTGCCAAGAACATAACATTTCAAAACACTACTCCTGTTCCTGCACCAGGAGCAATTGGAAAACAAGCAGTTGCATTCAGGATTTCAGCAGACACAGCAGCATTCTTGGGCTGCAAATTCTTAGGAGCACAGGACACACTGTATGATCATTTGGGCAGGCATTACTATAAGGATTGTTATATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCTCTCTCCCTTTATGAGGGATGTCACGTGCATGCCATAGCACAGAATACAGGGGCCTTAACAGCTCAAGGAAGAAGCAGTATGTTGGAAGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCTTTTTCTCGCGTGGTCTTCGCCTATACCTATATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTAGCATGGTCAAGAGAACTCACTGATGAGGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATCAAAATTTAG 1014 0.425 MSRVEYSEQQFMKWVNFVGSLKHTVFKTAKNKLFASYTLHVDKNPALGDFTSIQEAIDSLPSINLVRVIIKVHAGVYTEKVNIPALKSFITIEGAGADKTIVQWNDTAQTPGPSGRPLGTIGSATFAVNSLYFIAKNITFQNTTPVPAPGAIGKQAVAFRISADTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIAQNTGALTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVAWSRELTDEEARPFLSLSFIDGTEWIKI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi857g00019 337 Pfam Pectinesterase 48 331 IPR000070 GO:0030599|GO:0042545
Sebi857g00019 337 Gene3D - 34 337 IPR012334 -
Sebi857g00019 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 336 - -
Sebi857g00019 337 SUPERFAMILY Pectin lyase-like 35 336 IPR011050 -
Sebi857g00019 337 FunFam Pectinesterase 35 337 - -
Sebi857g00019 337 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi857g00019 Sebi-Chr857 259444 262523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi857g00019 50 335 Carbohydrate Esterase AT5G47500 50.871 1.00e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi857g00019 K01051 - gmx:100793314 642.499