Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi855g00023 ATGTCTGTGTTGGCAGTTTCTAACCTTCTAGCCTGTTGGCTGTCTGGGCTATTTCTTCAGGAGGGTGGATCATTTTTATGGAGCTTTATCCTGGGTTTGCTTTATATCGCGGGGTTATATGAGTTTGCACAATATTCCTCGAATGGGAGTACTCTGGGGACTGATGGTATGCGGTGGCAGGATCTGAGTGATAGCACCAATGGCATGAAAGAGGAAGTGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTTTGAGAAAGCCTCCTTCATCAATCCAGAAGCCCAGTATGCTCAGGCAGAGGGAGAAGGTGGAGCAGCTGAGAAGTTTGCAGTGAGAGGGTTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTTGGTATGCTCGGTCCCAATGGTGCTGGGAAGACTTCTTTCATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGCACGGCATTTGTTCAAGGCCTGGACATAAGAACTCATATGGATGAAATATATACTAGCATGGGAGTGTGCCCACAGTATGACTTACTGTGGGAAAGCTTGACAGGGAGAGAGCACCTACTTTTTTATGGTAGGCTTAAAAATCTTAAAGGTTCCTATTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGGGTCGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTGCATTGATTGGGGATCCCAGAGTTGTTTATATGGATGAGCCAAGTACCGGGTTAGACCCTGCTTCAAGAAAAAGCTTATGGAATGTTATTAAGCTTGCAAAACGGGATCGTGCAATCATTCTGACTACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCGTAGGAAATCCAAAGGAGCTGAAAGCTAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCGGATCATGAGAAGGATGTGAAAAACATGGTGCATAAGCTCACCCCAAATGCCAACAGGGTATACCATATCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCGGATGTATTCCGAGCTGTTGATGCTACAAAGAGAAAATTCACTGTTTTTGCATGGGGTTTATGTGACACCACATTGGAAGATGTCTTCATTAAAGTGGCACGTGAGGCTGAGGCATTGGATGCCTAG 1233 0.4428 MSVLAVSNLLACWLSGLFLQEGGSFLWSFILGLLYIAGLYEFAQYSSNGSTLGTDGMRWQDLSDSTNGMKEEVEKSSFFLERIFEKASFINPEAQYAQAEGEGGAAEKFAVRGLFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGTAFVQGLDIRTHMDEIYTSMGVCPQYDLLWESLTGREHLLFYGRLKNLKGSYLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAIALIGDPRVVYMDEPSTGLDPASRKSLWNVIKLAKRDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELKARYGGTYVFTMTTSSDHEKDVKNMVHKLTPNANRVYHISGTQKFELPKEEVKIADVFRAVDATKRKFTVFAWGLCDTTLEDVFIKVAREAEALDA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi855g00023 410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 327 IPR003439 GO:0005524
Sebi855g00023 410 Pfam ABC transporter 116 256 IPR003439 GO:0005524
Sebi855g00023 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 322 IPR027417 -
Sebi855g00023 410 CDD ABC_subfamily_A 110 315 - -
Sebi855g00023 410 Gene3D - 93 356 IPR027417 -
Sebi855g00023 410 SMART AAA_5 120 304 IPR003593 GO:0016887
Sebi855g00023 410 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 105 406 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi855g00023 410 FunFam ABC transporter A family member 7 87 355 - -
Sebi855g00023 410 ProSitePatterns ABC transporters family signature. 229 243 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi855g00023 Sebi-Chr855 261419 265934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi855g00023 116 314 Calmodulin-binding Proteins AT2G36910 24.286 1.70e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi855g00023 - - gmx:100806425 551.592