Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi855g00013 ATGGAAGCTAACAAACTTAGATTGCTCTTCTTTTGTGTACTTTTTCTTGCTATATTCCCTACCCTCAGGGCTAATATCGCCCAATTTGACCAAGTATGGCTGAAGCGATCTCAGGAAGCCAAAAAAGCAGCACAACAGGCTTTCAAGTCAAACCCTGAAGAAGTAGCTGATGATTTCAATAAGCACGTCAACAAGGCTGTGAATGGCTTCAATAGCACGAGGAGGGCTTTAGCCAAATACAATGGTCCATGCAATGCCACAAATCCCATTGACAGTTGCTGGAGATGTGATGAAAACTGGGAAAAGAACCGCAAAAAGTTAGCAGATTGTGTTATTGGTTTTGGTCATGGCACAACAGGAGGCAAAGATGGCGAAATTTATGTTGTGGATGATCCATCTGATGATGACCTTGTCAGCCCAAAACCAGGGACTTTGAGACATGCTGTCATTCAAAAGGAGCCACTTTGGATCATTTTTAAGAAAAATATGTCCATCAAACTCAGAGCAGAGCTTCTACTAACTGATAATAAGACTATAGATGGACGTGGTGCAAACGTTCATATTAGTGATGGTGCTCAAATTACATTGCAATATGTGCAAAACATTATCATTCACGGACTGCACATCCATGATATCAAAAGAGCTAGTGGTGGCCTCATCAGAGACTCCATGAATCACTATGGATACCGTTCAACGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTACTAATGTTTGGATAGATCATATTTCTATGTCCAATTGTGATGATGGCCTTGTAGATGCTGTAGAGGGATCAACAGCCATTACCATCTCCAACTGCCATATGACACATCATAATGATGTTATGTTATTTGGTGCGAGTGATACCTACTCAGGAGATAAACTCATGCAAATAACTCTGGCTTTCAACACCATTTTGGACAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTTGTTCATGTTGTCAACAATGACTACACTCACTGGCTTATGTATGCCATTGGTGGGAGTTCACATCCCACCATCATCAGCCAGGGAAACCGATTTATTGCTCCAGAAAACCGAAATGCAAAAGAGGGATTATGCACCTGAAAGCGAGTGGAAGAAATGGGATTGGAGATCAGAAGATGACTTAATGATGAATGGAGCCTTCTTTGTTGAGTCTGGAAATAAGGTCACAAATGGTCCCAAGACAGGCATCACTGCAAAGCCTGGTTCATTTGCTGCAAGCCTCACTCGCTTTGCAGGTGCTCTAAAATGTGAACCAAACAAGGAATGCTGA 1296 0.4228 MEANKLRLLFFCVLFLAIFPTLRANIAQFDQVWLKRSQEAKKAAQQAFKSNPEEVADDFNKHVNKAVNGFNSTRRALAKYNGPCNATNPIDSCWRCDENWEKNRKKLADCVIGFGHGTTGGKDGEIYVVDDPSDDDLVSPKPGTLRHAVIQKEPLWIIFKKNMSIKLRAELLLTDNKTIDGRGANVHISDGAQITLQYVQNIIIHGLHIHDIKRASGGLIRDSMNHYGYRSTSDGDAISMFGATNVWIDHISMSNCDDGLVDAVEGSTAITISNCHMTHHNDVMLFGASDTYSGDKLMQITLAFNTILDKDWCRGCQGADGVLFMLSTMTTLTGLCMPLVGVHIPPSSARETDLLLQKTEMQKRDYAPESEWKKWDWRSEDDLMMNGAFFVESGNKVTNGPKTGITAKPGSFAASLTRFAGALKCEPNKEC 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi855g00013 431 Pfam Pectate lyase 169 305 IPR002022 -
Sebi855g00013 431 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Sebi855g00013 431 Gene3D - 87 311 IPR012334 -
Sebi855g00013 431 Gene3D - 355 424 IPR012334 -
Sebi855g00013 431 SMART amb_all 162 330 IPR002022 -
Sebi855g00013 431 PANTHER PECTATE LYASE 18-RELATED 357 429 IPR045032 GO:0030570
Sebi855g00013 431 SUPERFAMILY Pectin lyase-like 88 422 IPR011050 -
Sebi855g00013 431 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Sebi855g00013 431 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Sebi855g00013 431 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Sebi855g00013 431 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Sebi855g00013 431 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi855g00013 Sebi-Chr855 146859 149070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi855g00013 1 431 Polysaccharide Lyase AT3G01270 47.303 8.52e-150 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi855g00013 K01728 - gmx:100801864 548.51