Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi855g00005 ATGGCGGGTGGGAGGGTCTTTAGTAGTGGTGGTGGTGGTCCTGCAAATGTTTCAAATATGACTATTTTGCTTCACAATCAAACTCCTCGTGCCACTTCTCAACCTCTTGATTCTCTTTTCCTTTCTACATCCACTCCTTTCCTTGGTTCAAGATCTATGGTGAGCTTTGAAGATGTTCAAAGAGGGAAGGGGCATAATGGGTCGTTTTTCCGTGCATTTGATCTTGATGAGAATTATGATGATGGCATGGATGAGTACTTTCATCACACAGAGAAGAAGCGGCGTCTCTCTGTGGATCAAGTTCAGCTTCTTGAGAAAAGCTTTGAGGAAGAGAACAAGCTTGAACCTGAGAGGAAAACCAAGATAGCAAAGGATCTTGGTTTGCAACCACGGCAAGTTGCAATTTGGTTTCAGAACCGCAGAGCAAGGTGGAAGACCAAACAGCTTGAGAAAGATTATGAATCTCTTCATGCTAGCTATGAGAATCTCAAGTCCAACTATGACAACCTCCTCAAGGAGAAAGAAAATTTAAAAGCTGAGGTGGCAAGTCTAACTGAAAAGGTGCTTGCAAGAGAGAAACAAGGGGGAAACTTTAAACAACAGGGTGAAGGTGAAAGTGAAACAAAGGGGTTAATGTTATTGCAGGAACCACCCCAAAAGCCTTTACTTGAATCAGTTTCTGAGGGTGAAGGATCCAAGGTCTCTGTTGGAGTTTGTAATAATAATAACAAACAAGAAGATATTAGTTCAGCAAGGAGTGACATTTTGGATTCTGATAGTCCACTTTACAATGATGGAGTTCACTCTACACTACTAGAGACAGGTGATTCTTCTTATGTATTTGAACCTGATCAATCAGACTTATCACAAGATGAAGAAGACAACCTCAGCAGGAGCTTTTTGCCTCCATACATATTTCCAAAACTTGAAGATATGGATTACTCCAACCCGCCTGAAAGTTCATTATTTGCTCTTTTTGTTCAAAAGGAGTGA 993 0.4109 MAGGRVFSSGGGGPANVSNMTILLHNQTPRATSQPLDSLFLSTSTPFLGSRSMVSFEDVQRGKGHNGSFFRAFDLDENYDDGMDEYFHHTEKKRRLSVDQVQLLEKSFEEENKLEPERKTKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLHASYENLKSNYDNLLKEKENLKAEVASLTEKVLAREKQGGNFKQQGEGESETKGLMLLQEPPQKPLLESVSEGEGSKVSVGVCNNNNKQEDISSARSDILDSDSPLYNDGVHSTLLETGDSSYVFEPDQSDLSQDEEDNLSRSFLPPYIFPKLEDMDYSNPPESSLFALFVQKE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi855g00005 330 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Sebi855g00005 330 CDD homeodomain 92 148 IPR001356 GO:0003677
Sebi855g00005 330 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Sebi855g00005 330 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Sebi855g00005 330 MobiDBLite consensus disorder prediction 193 297 - -
Sebi855g00005 330 MobiDBLite consensus disorder prediction 234 285 - -
Sebi855g00005 330 Coils Coil 146 194 - -
Sebi855g00005 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 78 232 IPR045224 GO:0003700
Sebi855g00005 330 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Sebi855g00005 330 Gene3D - 142 191 - -
Sebi855g00005 330 Gene3D - 95 141 - -
Sebi855g00005 330 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Sebi855g00005 330 SMART HOX_1 90 151 IPR001356 GO:0003677
Sebi855g00005 330 Pfam Homeobox associated leucine zipper 147 188 IPR003106 GO:0006355|GO:0043565
Sebi855g00005 330 FunFam Homeobox-leucine zipper protein HAT5 85 149 - -
Sebi855g00005 330 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi855g00005 Sebi-Chr855 45315 46904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi855g00005 39 195 Homeobox Transcription Factor Family AT3G01470 50.000 5.90e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi855g00005 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi855g00005 - - gmx:100799054 415.616