Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi855g00001 ATGGGTGCTTCAAAAGTTGGCAGATGTGGAAGAAAAAGGAGAACAATGGCTGACAAGAGTTCAATTACTCAGGCCACAGCCAGACAACTCTCTAGCAAATTGAGTAAACTTGATTTGGCTGATCAAGAATGGATCAATAGGATTCCAGAATGTCCAGTATATCACCCATCAGAGCAAGAGTTTGAGCATCCTTTAGTTTATCTACAAAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCCTCCAATCCAGCTTCTTTTGTCTTAATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAAATGTACAGCCTCTTCGGCTTGCTAAATGGAATGAGAATGATATAATAACTTTTTCTATGAGAAACAGTTCTGAAGGTCTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGTATGAGATGGCACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCTAATGACAAGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTTCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTAAATCATGTGTATTGTAATAAGATTTTAACAAAACATGGAGAGGATGGAGCTTTCAAATATCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGCCTCTGCCATAGGGATTGTTATGTGGCTTACTTGCTGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTCCATGAGGAATGACTTGCTGGATCTGGAAGATGCTGCCAAACGTTTTCAACAGGAAAACAAATGCCTTGATACGTTATCTCTATCAAATATATTCTCCTATAACAGAAATGAATGCATCAAAGATCTCAAGAATAATCCTTGGCATGAAGAAAGAAGTCCCAGAAGAAGTGCTAATTCTGTAGGGGCAGCATCAAAACTGAAAAGAAGGGTAGCAGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGACAACAATGAAGCATTATAGAAACAATGGGCCTCCATCAGTAATAACATATCGAGAGTTTGTCAAATCTATACCAGTGACTCCAGACATAAAGTTAATGTTGTCAGAAGAAAAACTAAATGAGATCCTAGTAATAGCTATAGCTTCTCCAGAATCTGGGAAGAGGGAAAATGGATGCAAGCAGAATGGACCAAACCACCACAATGGTTGGTGTTCGGTTCTAGCATCCCATGAGACCTTTGAGGAAAGGGTACAGATGGATGATATCCCGAAATGCAAAGAAAAGCTTACCAAAGAGGGGACCCCATGA 1593 0.3955 MGASKVGRCGRKRRTMADKSSITQATARQLSSKLSKLDLADQEWINRIPECPVYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPASFVLMKEKKDFKFETNVQPLRLAKWNENDIITFSMRNSSEGLSSSYVEKEFWYEMAHGEKGTVEYGVNVEGTAFSCDPNDKLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLNHVYCNKILTKHGEDGAFKYLAYKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHASAIGIVMWLTCCASTAILIQFVFSMRNDLLDLEDAAKRFQQENKCLDTLSLSNIFSYNRNECIKDLKNNPWHEERSPRRSANSVGAASKLKRRVADNIKHNVEKNKKTTMKHYRNNGPPSVITYREFVKSIPVTPDIKLMLSEEKLNEILVIAIASPESGKRENGCKQNGPNHHNGWCSVLASHETFEERVQMDDIPKCKEKLTKEGTP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi855g00001 530 Gene3D Cupin 51 406 - -
Sebi855g00001 530 Pfam jmjN domain 52 84 IPR003349 -
Sebi855g00001 530 SUPERFAMILY Clavaminate synthase-like 179 326 - -
Sebi855g00001 530 MobiDBLite consensus disorder prediction 1 22 - -
Sebi855g00001 530 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 409 - -
Sebi855g00001 530 SMART JmjN_1 50 91 IPR003349 -
Sebi855g00001 530 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Sebi855g00001 530 ProSiteProfiles JmjC domain profile. 174 361 IPR003347 -
Sebi855g00001 530 SMART cupin_9 174 341 IPR003347 -
Sebi855g00001 530 Pfam JmjC domain, hydroxylase 207 326 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi855g00001 Sebi-Chr855 2719 7156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi855g00001 174 338 C2H2 Transcription Factor Family AT5G04240 45.029 1.47e-40 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi855g00001 JmjC 8.5e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi855g00001 - - gmx:100809650 547.354