Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi852g00010 ATGATTGTGTGTATTTTGATGCTTTACTTCCTTTGGATTAAGGGCGGTCGGATTGAAGCAACTGTTGGGAAGCAGTTCATAAGGAAATTTGATAGCTGTGTGGTTGAGGGAGAGGTCTATAAGGTGACTGATTTTGCAATCATCAAGAACCTTGGAAAGTTTAGAGCAACGAGCCATGGTTTCAAGCTGGTTTTCAATGCCACCACCAAATTGTTACCCACACTGGTTGGAAGTATCCCATTTCATGGGCTCTCATTCCTCAAGACCTCCGATATCATGAAAACAAAGGGCCATTCAGACTACCTATTGGATTATATGGGGATCTTGACAGCAGTATCTGATGAGATGACAATGACCTCAAGAGATGGACGAGGGACTAGGTTGATGCAGTTGGAACTGGTTGATGAAACGGGGGAGATAAGGTGTGCAATCTTTGGAGATTTGATTGATGTTGTTGCTGGCTTACTTGCTCTGCCTCGGGTAGGTCTACCTGTGGTTATCCTTCAGGTTGTGAGGGTAAACAAGTATAAAGGAGAGGTAGGGATACAAAATGTGATGAATGCTACGAAGATACTGTGGGAGCCTGACATCCCAGAAGCAATTCAGTTTAAACAAGAGCTGGCTGTGCATGAGGTGGAGTCTGATCTGAAGGTTGGAATGCTGCCCAAGAGTAAAACAATTGTCCCTCTGCGGGATGATTTTTTCAAGCTTTACCCAAGGAAGACCTTGTGCCAATTAGTTGAAACTGAGGAGGAGGGTTATTTCACAACCGTGGCAACTATTTCTAAGATTTGTGATGATTATCCTTGGTGGTACATGGCCTGCAGTTGTATGAGAGCTGTGACACAAATTGGAGTAGCATATTTCTGCAAAGATTGTAACTTGCATATGTTTAATGCTATGCCCAGGTATAAGCTGAAGTTGGATGTCAGCGATGGAGATGACTTAGTGAGGCTGGTGCTTTTTGATGGTGAAGCAGTTGATCTTCTGAATAGGTCTTGCAAGGAGCTGGTGATACAGTCAAAGGTTGAGTCGGACTGTGACTTTCCTGAAGAAATCTCCATGTTGGTTGGGAAGGAGGTTTTATTCAAGGTGGAGAAGACAGCTGAAGCTTCTTCCAACTTTGATGGCTCTCTAAAAGTTAAGAGGGTTTGCTCAGACCCTCTATTGATTGATGAGTACAAGCAAAGGCTATGTGAGGATACACCATTAAAGCAAAAGTTTGCACCATTTTTCCCAAAACTTGGCAATGGTGAGGAGAGTAGTGGCACGAAGGAGATCAAAGTTGAGAGTTGTTCGGTCATTACAGAGATTGATGTGACCCCTTTGTCTTATGGTCAACCCTCCAACACACCTGATGCAGAATCTATTATCTCAAAGAGGGAAGCCACTCAATCTCTTGAACCTGCACCCGAACGCAAAAGGAGGGCCAAGGTGAAGCCTGTAAAGTTTGAGTAA 1458 0.4383 MIVCILMLYFLWIKGGRIEATVGKQFIRKFDSCVVEGEVYKVTDFAIIKNLGKFRATSHGFKLVFNATTKLLPTLVGSIPFHGLSFLKTSDIMKTKGHSDYLLDYMGILTAVSDEMTMTSRDGRGTRLMQLELVDETGEIRCAIFGDLIDVVAGLLALPRVGLPVVILQVVRVNKYKGEVGIQNVMNATKILWEPDIPEAIQFKQELAVHEVESDLKVGMLPKSKTIVPLRDDFFKLYPRKTLCQLVETEEEGYFTTVATISKICDDYPWWYMACSCMRAVTQIGVAYFCKDCNLHMFNAMPRYKLKLDVSDGDDLVRLVLFDGEAVDLLNRSCKELVIQSKVESDCDFPEEISMLVGKEVLFKVEKTAEASSNFDGSLKVKRVCSDPLLIDEYKQRLCEDTPLKQKFAPFFPKLGNGEESSGTKEIKVESCSVITEIDVTPLSYGQPSNTPDAESIISKREATQSLEPAPERKRRAKVKPVKFE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi852g00010 485 CDD RPA1_DBD_C 245 401 IPR047192 -
Sebi852g00010 485 Gene3D - 78 215 IPR012340 -
Sebi852g00010 485 PANTHER OS03G0429900 PROTEIN 166 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi852g00010 485 SUPERFAMILY Nucleic acid-binding proteins 15 72 IPR012340 -
Sebi852g00010 485 MobiDBLite consensus disorder prediction 443 485 - -
Sebi852g00010 485 MobiDBLite consensus disorder prediction 443 463 - -
Sebi852g00010 485 SUPERFAMILY Nucleic acid-binding proteins 84 208 IPR012340 -
Sebi852g00010 485 Gene3D - 235 402 IPR012340 -
Sebi852g00010 485 CDD RPA1_DBD_A_like 14 70 - -
Sebi852g00010 485 Pfam Replication factor-A C terminal domain 254 373 IPR013955 -
Sebi852g00010 485 Pfam Domain of unknown function DUF223 14 73 IPR003871 -
Sebi852g00010 485 Gene3D - 14 73 IPR012340 -
Sebi852g00010 485 MobiDBLite consensus disorder prediction 466 485 - -
Sebi852g00010 485 SUPERFAMILY Nucleic acid-binding proteins 238 370 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi852g00010 Sebi-Chr852 171764 174053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi852g00010 15 337 Core DNA Replication Machinery Family AT2G06510 22.636 8.52e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi852g00010 - - lja:Lj1g3v3385890.1 340.502