Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi84g00047 ATGCTTGACTCAGTGCTTCTGGCGCTTTTCTTGCCCTGTCTAGGCATGAGCGCTGTCTTCATAGTCTACATGTGCCTTCTCTGGTACGCCACCACTCACCAGCCAGACATCAGGCTACCGACTAAGCCCGTCACCGAGAAGGGCCTCTCCCCGTCGGAGCTTGAAAAGTTACCCAGAATCACCGGTAAAGAGCTTGTCACAGGGACTGAATGCGCCGTGTGCCTCGACGAGATCGGGAACGATCAACCGGCACGTGTGCTTCCTGGTTGCAACCATGGCTTCCATTTGGAATGCGCTGACACCTGGCTTTCCAAGCACCCTCTTTGTCCGGTTTGTAGAGCCAAACTCGATCCCAATCTCTTCACTCCCTCTGAAAATAATCCATGTTGA 390 0.5359 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHQPDIRLPTKPVTEKGLSPSELEKLPRITGKELVTGTECAVCLDEIGNDQPARVLPGCNHGFHLECADTWLSKHPLCPVCRAKLDPNLFTPSENNPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi84g00047 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Sebi84g00047 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 119 IPR013083 -
Sebi84g00047 129 Pfam Ring finger domain 70 113 IPR001841 -
Sebi84g00047 129 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Sebi84g00047 129 SUPERFAMILY RING/U-box 70 120 - -
Sebi84g00047 129 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi84g00047 Sebi-Chr84 1035429 1035818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi84g00047 1 129 C3H Transcription Factor Family AT5G42200 55.147 3.27e-46 145