Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi84g00028 ATGAGAAACGCGGCCCCTGGGTGCAGTCTTCCTAAGGAGAACCATGAGCAAGCTGGTACTAAAGGCTCTTACTGTAATCAAGATGTTGCTATCAAAGTCTTTAAGGATGGTTTGTTGAATGAAGATGCAAAGAGGGAGTTTACACAGGAAGTCGATATCCTGAGTAAAATTCAGCACAAGAATGTTATCAAATTTATTGGTGCCTGTACAAAACCAAACCTTTATCTTGTCACAGAGTATTTATCTGGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTTATCCTTACCCTTCCATCTTTGCTCAAAGTAGCAATTGATGTTTCCGAAGGAATGAATTACTTGCATCAGAGAGATATTATACATAGAGACCTCAAAGCTGCTAATCTTTTAATGGATGAGAAAGGGGTGGTTAAGGTTGCTGATTTTGGTGTAGCCAGATTGCAAGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTACCGGTGGATGGCCCCAGAGGTTATTGAACATAAGCCATATAATCACAAAGCCGATGTTTTTAGCTTTGGGATTGTTCTTTGGGAGCTGCTGACAGGAAAGCTTCCTTATGAACATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTACAAAAGGATTTGAGGCCTGAAATTCCAAGAGATACGCATCCAAAGTTAGTGGAATTGCTCCTCTGGTGCTGGCACAAAGATCCATCTTTAAGACCTGATTTCTCAGAAATTCTGATGTTTCTGCAGCACATTACCAAGACGGTATTGGGAGGAATCTAG 795 0.4126 MRNAAPGCSLPKENHEQAGTKGSYCNQDVAIKVFKDGLLNEDAKREFTQEVDILSKIQHKNVIKFIGACTKPNLYLVTEYLSGGNMYDFLHIQKVILTLPSLLKVAIDVSEGMNYLHQRDIIHRDLKAANLLMDEKGVVKVADFGVARLQDQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGIVLWELLTGKLPYEHLSPLQAAVGVVQKDLRPEIPRDTHPKLVELLLWCWHKDPSLRPDFSEILMFLQHITKTVLGGI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi84g00028 264 SMART serkin_6 12 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi84g00028 264 Gene3D Transferase(Phosphotransferase) domain 1 83 261 - -
Sebi84g00028 264 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi84g00028 264 SUPERFAMILY Protein kinase-like (PK-like) 26 257 IPR011009 -
Sebi84g00028 264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Sebi84g00028 264 MobiDBLite consensus disorder prediction 1 21 - -
Sebi84g00028 264 Gene3D Phosphorylase Kinase; domain 1 19 82 - -
Sebi84g00028 264 PRINTS Tyrosine kinase catalytic domain signature 115 133 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PRINTS Tyrosine kinase catalytic domain signature 161 171 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PRINTS Tyrosine kinase catalytic domain signature 224 246 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PRINTS Tyrosine kinase catalytic domain signature 78 91 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PIRSF ILK 9 262 - -
Sebi84g00028 264 Pfam Protein tyrosine and serine/threonine kinase 23 252 IPR001245 GO:0004672|GO:0006468
Sebi84g00028 264 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 256 - -
Sebi84g00028 264 CDD STKc_MAP3K-like 21 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi84g00028 Sebi-Chr84 681938 685426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi84g00028 21 260 MAP Kinase Kinase Kinase AT4G35780 66.805 6.17e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi84g00028 PK_Tyr_Ser-Thr 4.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi84g00028 - - gmx:100818047 396.741