Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi849g00011 ATGGAAATTCTCTCTCCTGCACCTTTTACACCCAACTCCAATTGGTGTGTGGAAGATAATAACAGGAGCACAAAATGGACTCCGCAAGAGAACAAGCTCTTTGAAAATGCTCTTGCAGTGCATGATAAGGATACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCAGGGAAAACAGTTGGAGATGTGATCAGACAATACAAGGAATTAGAAGTAGATGTTAGCAATATAGAAGCTGGTTTGATCCCAGTTCCTGGATATACTACTCCAACATCACCCTTCACCTTAGATTGGGTGAACACACCTGGTCCTGGTTACTATGATGGGTTTAAAGGAAGTGGAAAAAGATCTTCCTCAGTTAAACCTCCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACATAAATTGTTTCTACTTGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCCCGCAATTTTGTCATTACTAGAACCCCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATAAGGCAACTTTCAGGTGGCAAAGACAAAAGGAGGGCCAGTATTCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACTTCTTCTTCAGAAGATACCAATAGATCCACTTCACCACAGCATTCAATGATGCTTTCACAGCAGCAGCAAAATTCTACTGCTTCTACATCTAGAGCTCATTTTCAGTGGAATAATCAACCAAATTCAGGAGTATCTATGGCTTTCAATCCTGCACATGAAGAAGTCTTCATGTCACCACATGGTGTTAACTCCTATGGACTTAAAATGCAAGGCCAAAATCTCCAAAAGGGTGCTATTCATGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGCTTTCCAAATGCAACAGTCTTCCCAACACTATTCTCATGCATAA 942 0.4183 MEILSPAPFTPNSNWCVEDNNRSTKWTPQENKLFENALAVHDKDTPDRWHKVAEMIPGKTVGDVIRQYKELEVDVSNIEAGLIPVPGYTTPTSPFTLDWVNTPGPGYYDGFKGSGKRSSSVKPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSSEDTNRSTSPQHSMMLSQQQQNSTASTSRAHFQWNNQPNSGVSMAFNPAHEEVFMSPHGVNSYGLKMQGQNLQKGAIHESSYLGPQTQNMAFQMQQSSQHYSHA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi849g00011 313 CDD SANT 133 178 IPR001005 -
Sebi849g00011 313 Gene3D - 132 182 - -
Sebi849g00011 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Sebi849g00011 313 SUPERFAMILY Homeodomain-like 127 181 IPR009057 -
Sebi849g00011 313 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Sebi849g00011 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Sebi849g00011 313 Pfam Myb-like DNA-binding domain 25 69 IPR001005 -
Sebi849g00011 313 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Sebi849g00011 313 FunFam Transcription factor SRM1 18 85 - -
Sebi849g00011 313 CDD SANT 25 71 IPR001005 -
Sebi849g00011 313 MobiDBLite consensus disorder prediction 200 245 - -
Sebi849g00011 313 ProSiteProfiles SANT domain profile. 21 76 IPR017884 -
Sebi849g00011 313 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Sebi849g00011 313 SUPERFAMILY Homeodomain-like 24 76 IPR009057 -
Sebi849g00011 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 254 IPR043363 -
Sebi849g00011 313 Gene3D - 17 85 - -
Sebi849g00011 313 SMART sant 130 180 IPR001005 -
Sebi849g00011 313 SMART sant 22 74 IPR001005 -
Sebi849g00011 313 FunFam transcription factor MYB1R1 132 183 - -
Sebi849g00011 313 MobiDBLite consensus disorder prediction 112 133 - -
Sebi849g00011 313 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi849g00011 Sebi-Chr849 274437 275861 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi849g00011 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi849g00011 - - gmx:778034 485.337