Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi848g00014 GTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAGGCAGTGGAGATGGAGAGGAGCTTGAGGACTAACCCCTCAAGAAATTCTGCAATTTTTCATCATCCCATCCTTGGTGATTTTGAATTGCAGCATTTACCTGTCGGTGTAAATGATGCTGATGTTGAACAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCACACCACCTTGGTCAGAGAGAAGGTCAAAGAACTAGGTCATCTGCTCGAGGCCGTCCACACTTCTTAGTATACTCAACTGAGCCCAGTGCACCTCCATCAGGTCCTGATTCTGCTGCTGGAGGGGGAAATGAACCAGTGGCAATTCCTTTAGGAAGTCCATCTACCCCACTTACATCTGATGGAGATGAACCAACATCATCACAGCAGATCCCATATTTTCAAACTCATGGCTCTTCTTTAACTCCCGGGTCTACTGTCATGGCAACAAATCTTCAAGGAATTTACTCTGATGATAGAAGGTCTACCACACATTCATCACCAGCAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTATCTGATTCTCTGCGGTCCAGATGGAATGCAGTGTCCCTGAGATACAAAGAATCAATTTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAATTCTTCCATGTCAGAATTTGGTTCAGAAGTTAGAAGAGAGTTGAATGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACCAGGGAAAACAATCAAGCTGAAGGTACTTCTTTGTCAAATCATTTGATGGGTGGTTCTATCCAAGAAACAAGCAACCAGAGGAATGTGGAAGCTCATGGAGAGAACTCTTTACATGAAAACAAGACTCCAGCTACATGTTCTGCTAGCTCAGATTCAAATTGA 1017 0.4464 VTNCKHEFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVEMERSLRTNPSRNSAIFHHPILGDFELQHLPVGVNDADVEQRIIQHLAAAAAMRRAHHLGQREGQRTRSSARGRPHFLVYSTEPSAPPSGPDSAAGGGNEPVAIPLGSPSTPLTSDGDEPTSSQQIPYFQTHGSSLTPGSTVMATNLQGIYSDDRRSTTHSSPANQDRAGPSEFQSLSDSLRSRWNAVSLRYKESISKGTRGWKERLFSRNSSMSEFGSEVRRELNAGIASVSRLMERLETRENNQAEGTSLSNHLMGGSIQETSNQRNVEAHGENSLHENKTPATCSASSDSN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi848g00014 338 Coils Coil 266 286 - -
Sebi848g00014 338 SUPERFAMILY RING/U-box 2 33 - -
Sebi848g00014 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 43 IPR013083 -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 197 221 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 323 338 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 289 316 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 99 118 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 123 185 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 152 185 - -
Sebi848g00014 338 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 34 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 100 114 - -
Sebi848g00014 338 MobiDBLite consensus disorder prediction 287 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi848g00014 Sebi-Chr848 314285 317580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi848g00014 2 34 C3H Transcription Factor Family AT4G00335 51.515 2.37e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi848g00014 K19043 - gmx:100803582 516.153