Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi848g00011 ATGTTCATGCTTCACACTATGTGGCAAAATCTTTGTTCAACAAGCATTCTGGTATCAATTGCATTGTACCCTCGAGCTGATAAGATGGGAAACAACTGTGTTGGATCGAGAACCTCTACTTTTCCAAGTTCATTCTGGTGGTCACGTGCAAAGAAGAAAGAGGCTTCTCGTGCACACAAAGAAGTAGCTGTGAGCAAAAACTCAAAAGCTACAGAACATGTTCAACGCAAGCCTCCACAGGTAGTTAAGATTGACAAGGAGGAGTTGAAGACACAATCCAAAGAGACTACTAAATCACCTTCAGAATCTATAGTTGCTACAGGAGAGCCTGCAAAACCAAAGAGACCCCACAATGTGAAGAGGCTAGCAAGTGCAGGGCTCAAAGCAGATTCTGTTTTGCAGAGAAAAACGGGTAGTCTTAGGGAGTATTATAATTTGGGACAGAAACTAGGACAAGGGCAATTTGGAACTACTTTCCTTTGCGTGGAGAAAGCTACTGGGAAACAGTATGCTTGCAAGTCCATCTTGAAGAGGAAATTGCTGACAGATGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCACCACTTGGCTGGGAGTCCTAATGTGATATCCATTAAGGAGGCTTATGAGGATGCTGTTGCTGTTCATGTTGTCATGGAATTGTGTGCTGGGGGTGAACTGTTTGATAGGAATGTGGAAAGAGGGCATTACACAGAAAGAAAAGCAGCTAAACTTGCAAGGACTATAGTAGGTGTTATTGAGTCTTGTCACTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAACTTCCTTTTCGTCAATGAGCAAGAAGATTCCCCCCTCAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAAATTTTCAATGATGTGGTAGGAAGTCCTTATTATGTTGCACCTGAAGTTCTACGCAAGCATTATGGTCCAGAAGCAGATGTATGGAGTGCTGGTGTTATCATATATATTCTCTTATGTGGTGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCGATTTTGCATGGTGATCTCGATTTCACATCAGATCCTTGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTCAGAGATTCTAGTAAACGGATAACAGCTTTTGATGTTCTTCGTCACCCCTGGATTCAGGTTGATGGAGCAGCCCCAGACAAGCCTCTTGATTCTGCAGTTTTGACTCGCCTGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAACCTGTCTGAAGAAGAAATTGCTGGATTGACAGAAATGTTTAAGATGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAAATTGGACTGAAAAAATTTGGTGCTAATCTCAATGAATCTGAAATTTATGATCTCATGCAAGCGGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAATTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTATATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCATAGGGGATGTCCCCTTGGAGGAAATGATCCGAGAAGCTGATCAGGATAATGATGGACGAATAGACTACAGTGAATTTGTGGCTATGATGCAGGGTAAGAGGGGCCGAAAGGGTAGCACTAGTTTTAGAATTGGATTTAGGGAGGTACTACCAGTATGTTAA 1812 0.4172 MFMLHTMWQNLCSTSILVSIALYPRADKMGNNCVGSRTSTFPSSFWWSRAKKKEASRAHKEVAVSKNSKATEHVQRKPPQVVKIDKEELKTQSKETTKSPSESIVATGEPAKPKRPHNVKRLASAGLKADSVLQRKTGSLREYYNLGQKLGQGQFGTTFLCVEKATGKQYACKSILKRKLLTDEDVEDVRREIQIMHHLAGSPNVISIKEAYEDAVAVHVVMELCAGGELFDRNVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKHYGPEADVWSAGVIIYILLCGVPPFWGESEQEIFEAILHGDLDFTSDPWPSISESAKDLVRKMLVRDSSKRITAFDVLRHPWIQVDGAAPDKPLDSAVLTRLKQFTAMNKLKKMALRVIAENLSEEEIAGLTEMFKMIDTDNSGQITFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLIAAFSYFDKDGSGYITQDELQKACEEFGIGDVPLEEMIREADQDNDGRIDYSEFVAMMQGKRGRKGSTSFRIGFREVLPVC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi848g00011 603 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Sebi848g00011 603 SUPERFAMILY EF-hand 441 581 IPR011992 -
Sebi848g00011 603 PANTHER SERINE/THREONINE-PROTEIN KINASE 132 576 - -
Sebi848g00011 603 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Sebi848g00011 603 Gene3D - 409 584 - -
Sebi848g00011 603 Pfam Protein kinase domain 144 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi848g00011 603 FunFam Calcium-dependent protein kinase SK5 230 414 - -
Sebi848g00011 603 ProSitePatterns EF-hand calcium-binding domain. 564 576 IPR018247 -
Sebi848g00011 603 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Sebi848g00011 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Sebi848g00011 603 ProSiteProfiles Protein kinase domain profile. 144 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi848g00011 603 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Sebi848g00011 603 ProSiteProfiles EF-hand calcium-binding domain profile. 556 586 IPR002048 GO:0005509
Sebi848g00011 603 FunFam Calcium-dependent protein kinase 1 410 584 - -
Sebi848g00011 603 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Sebi848g00011 603 MobiDBLite consensus disorder prediction 60 117 - -
Sebi848g00011 603 CDD STKc_CAMK 144 401 - -
Sebi848g00011 603 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Sebi848g00011 603 SMART efh_1 449 477 IPR002048 GO:0005509
Sebi848g00011 603 SMART efh_1 521 549 IPR002048 GO:0005509
Sebi848g00011 603 SMART efh_1 485 513 IPR002048 GO:0005509
Sebi848g00011 603 SMART efh_1 555 583 IPR002048 GO:0005509
Sebi848g00011 603 CDD EFh 450 509 IPR002048 GO:0005509
Sebi848g00011 603 Pfam EF-hand domain pair 450 510 IPR002048 GO:0005509
Sebi848g00011 603 Pfam EF-hand domain pair 521 581 IPR002048 GO:0005509
Sebi848g00011 603 CDD EFh 521 581 IPR002048 GO:0005509
Sebi848g00011 603 MobiDBLite consensus disorder prediction 60 95 - -
Sebi848g00011 603 SMART serkin_6 144 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi848g00011 603 SUPERFAMILY Protein kinase-like (PK-like) 142 403 IPR011009 -
Sebi848g00011 603 FunFam Calcium-dependent protein kinase 1 146 229 - -
Sebi848g00011 603 ProSitePatterns Protein kinases ATP-binding region signature. 150 177 IPR017441 GO:0005524
Sebi848g00011 603 Gene3D Transferase(Phosphotransferase) domain 1 230 408 - -
Sebi848g00011 603 ProSiteProfiles EF-hand calcium-binding domain profile. 517 552 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi848g00011 Sebi-Chr848 288131 292824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi848g00011 29 581 EF-hand Containing Proteins AT5G04870 69.336 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi848g00011 Pkinase 3.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi848g00011 K13412 - gmx:100783079 984.171