Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi847g00008 ATGGCAGATGGAAATGTATCACAGGCTACTGTGCCTCCATTTTCAGATGGGGGTGGACTTCAACAAGATGAGCCTCCAAATACTCCAATGTATGCTTTGGAGGATAGATATGAGGACAAACAAGAAGATATAACGATTCAGTCTGGCATGAGGTTTGAATCTGCGGAGGAGATTAAGACACTTTATCAAGATTATGCAATCAGAAAAGGATTTTCTATTGTAACAAGGAATTCGAGAAAAGGACCAGATGGAAAGCTTGTATACTTTTGCTTGACTTGTTCAAGGGAGGGGTCATACGTGTCATCCGTTCCCACAGATGTCAAGTCTGTACCTTCCACAAAAATGAAGTGTATCGCCCACATCACTGCCAATCTCAAGAAAGATGGACTATGGCACATCAACAAATGTGTGCACGACCATTCTCATGAGTTGAGCCCAGGAAAGTCCAGGGTCATAGAAGACATGTATGTGGGGGATAATCCAAGAGAGGCCAAGTATGATGTTTTATTCAATCGGATGGATGTTAGGGCCAACTGCAATTGTCTCCTATTTGAGTTTAAAGGCATCATTTGTAGGCATGCACTCAGTGTTCTAGCTCAAGAGAGAGTGAAGGAAGTGCCTATTGCGTACATATTGCCAAGATGGAGCAAAAAAGTCCGACGAAAGCACACTTATATTAAGTGCAGTTATGATGCAAAACAGCATGCACCTACAATGTCTCGCTTTGATGATTTATGCAAAGAGTTCTATGTTGTGGCTGAGATAGCAGCTGAAACCCCAGAAGCGACTAAGATTTTGGCACAAACAGTGCACGATGTGAAAGACAAAGTAAAGGCAGCTGCTAGTAGTAAACATCATGACGACAAAAAGGATGATGTGGACGATGTTCACAAGGATAAAGGAACACCGTCTGATGGCAGACCTCCACTACCAGGTCAGAAAATTCGAAGTCCGTTAGCGGTCAAGCGGAAGGGGAGGCCACCGGTAAACCGAAAAAGGTCAACTACTAATAGAATTATAAAGAAAAGGAAGGCCTGCACCAAACGGCAACAACATTCTGTGAACATCCATGAATCCATTGAGGGAACGTCTGCTCAGGAAAGTGGTGCAGAGTTGTATGTTGAGTCATCGTTGGAGATTATAAATGAATGGGCATCACTGACTTCCGAACATTTTCATTTGGATTCCATTGAGGGAACAAATGATAAGGACCATGGTGCACAGTTGCTTGTGGAGTCATCCTTGGACATTATCAATTGA 1260 0.4302 MADGNVSQATVPPFSDGGGLQQDEPPNTPMYALEDRYEDKQEDITIQSGMRFESAEEIKTLYQDYAIRKGFSIVTRNSRKGPDGKLVYFCLTCSREGSYVSSVPTDVKSVPSTKMKCIAHITANLKKDGLWHINKCVHDHSHELSPGKSRVIEDMYVGDNPREAKYDVLFNRMDVRANCNCLLFEFKGIICRHALSVLAQERVKEVPIAYILPRWSKKVRRKHTYIKCSYDAKQHAPTMSRFDDLCKEFYVVAEIAAETPEATKILAQTVHDVKDKVKAAASSKHHDDKKDDVDDVHKDKGTPSDGRPPLPGQKIRSPLAVKRKGRPPVNRKRSTTNRIIKKRKACTKRQQHSVNIHESIEGTSAQESGAELYVESSLEIINEWASLTSEHFHLDSIEGTNDKDHGAQLLVESSLDIIN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi847g00008 419 MobiDBLite consensus disorder prediction 1 31 - -
Sebi847g00008 419 MobiDBLite consensus disorder prediction 1 15 - -
Sebi847g00008 419 Pfam SWIM zinc finger 176 198 IPR007527 GO:0008270
Sebi847g00008 419 ProSiteProfiles Zinc finger SWIM-type profile. 166 202 IPR007527 GO:0008270
Sebi847g00008 419 PANTHER OS01G0519700 PROTEIN 167 352 - -
Sebi847g00008 419 MobiDBLite consensus disorder prediction 277 353 - -
Sebi847g00008 419 MobiDBLite consensus disorder prediction 319 350 - -
Sebi847g00008 419 MobiDBLite consensus disorder prediction 277 304 - -
Sebi847g00008 419 SMART 26again6 177 204 IPR006564 GO:0008270
Sebi847g00008 419 Pfam FAR1 DNA-binding domain 61 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi847g00008 Sebi-Chr847 109576 112731 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi847g00008 FAR1 5.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi847g00008 - - psat:127136936 166.007