Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi847g00006 ATGAATAGGAATTCTGAAAATAATGAAGATGGATTTCGATTGTTGGTGGAGGATGAAGCTGGAGCTGTATTTGTAGTAGATGAAAATTGGGTTGACAAATGTGTAGTTGAAGATGAAGGGGAAAATGATGAAGATGGGGCTGCTGTCTTTGTTGATCACGATTGGGAAGGTAGTAATGATGGAGAAGAAAATGAAGATCAATTACAGGGGGAAACAAAATTAATGGACAGTGAAGATGATATTCTGAATATGGGGGAGCTAAATTTGTTTAGTCCCCATGAAATTAAGAATTGGGAATTTGGTAATTTGGATGTGGCTTTCAAGTTCTATTTTGAATATGCAAAAGCCAATGGATTTAGTATACGCAAGGGCAGAACATTGAGGAATAAGAAGACGTTAGAGATGTATCAGAAAGAATTTTTGTGCTCTAGAGTCGGTACCCGTGAAGATAGGGGTCTTAGAATGGAAGATAGGGTTCGTGAGCCTAGAGCTGTAACTAGATGTCATATGCGTTTCAAAGAGAAAGAAGATGATTTCACATCTATACATGGGGACCCTGTAATGCAAAGTCGGCTCCAATCACTTGAAAGTTATGCTGCCAGAGTGTACACAAGGAGAGTAATTTTCTTGTTTCGGCGGGTGTTGCATAGGGCGTCACAGTTGGTAGTCACCGGATATACCCAAGCTGTTCGATGCCCTATATTCACTGTGAGAGGCCAATCCGTTCAGTCATATGAATGTCGTGTATCAGTGTATCCGTCTACAAAAGAAATTAAATGCGGTTGTCTAAAAATGGAGTCAAGAGGCTTACCGTGTGAGCATATTATTGCTGTCTTGAATCATTTGGGGATTGATGAAATACCAGATTCATTGGTTCTAAAACGGTGGACGAAGGGTGCTAAAGACGGTATTTGTGGAGAAGATGGGGAGAGATATGAAACATGGGATGCTGCTAGGAGTACTCGGAGGGCTGCACTAAATGGTTGGTATGATCAAGTTAGTTGTTTTAAGGCTGAAACTATAGAAAAATATAATATAGAGCGAGACAGGATATTTGCTGACCTCAAAGAATGCAGGGCGGAAAAAGCAGCCCAAGAAGAAAGATGTGGGTTTTCTGGTAATGTTGCTAGTGACACATTGAGGAACCCCGTGCGTGCAGCAACCAAGGGCAGCGGGGTTGCAACATCTTCTTCTGGTATAAGAGTTAGAAGAAAACAAAATTGTTCTATTTGTAAGCTTCCGGGACACAACAAATTGACATGCCCAAGGGGTGCTCAACAATATCAACCAAGACAGCAAGGTGGAGCAGCTGGAACCTCTAACACCACTGAACATGATGATGTTTTTCATAATTATGAAGAATTTGACCCCGATAATATGGATACTTCAAGTTCTTTTGGTGGTAATAGCTCCAGCTCAAACAACATGGGGTTCATGGCTAAGAAATGCAAGTTCGGTAAGAATGTTGCTATGATAACCTCTTGGACTGAGTATAATCCTGGGAGGAGGTTCTTAGGGTGTGCAAACTACAGGGAATCAACCACTCACTGTGATTATTTTGCTTGGTTTGATCCACCATCATGTGAGAGGTATGTCAAAATTATGAATTCATTACTGAAGAAGAACAACAATTTACAAACTAAAATTTCAGAGCATAAGCATGAAATTGGGGAGTTAAAAAATATTATTGCATCTCAGGAGGTAGAACTCGTGGAGCTTAAGATGAAAGTTGTGTCATTTGGAGCCTGA 1749 0.4054 MNRNSENNEDGFRLLVEDEAGAVFVVDENWVDKCVVEDEGENDEDGAAVFVDHDWEGSNDGEENEDQLQGETKLMDSEDDILNMGELNLFSPHEIKNWEFGNLDVAFKFYFEYAKANGFSIRKGRTLRNKKTLEMYQKEFLCSRVGTREDRGLRMEDRVREPRAVTRCHMRFKEKEDDFTSIHGDPVMQSRLQSLESYAARVYTRRVIFLFRRVLHRASQLVVTGYTQAVRCPIFTVRGQSVQSYECRVSVYPSTKEIKCGCLKMESRGLPCEHIIAVLNHLGIDEIPDSLVLKRWTKGAKDGICGEDGERYETWDAARSTRRAALNGWYDQVSCFKAETIEKYNIERDRIFADLKECRAEKAAQEERCGFSGNVASDTLRNPVRAATKGSGVATSSSGIRVRRKQNCSICKLPGHNKLTCPRGAQQYQPRQQGGAAGTSNTTEHDDVFHNYEEFDPDNMDTSSSFGGNSSSSNNMGFMAKKCKFGKNVAMITSWTEYNPGRRFLGCANYRESTTHCDYFAWFDPPSCERYVKIMNSLLKKNNNLQTKISEHKHEIGELKNIIASQEVELVELKMKVVSFGA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi847g00006 582 Pfam FAR1 DNA-binding domain 108 169 IPR004330 -
Sebi847g00006 582 PANTHER OS01G0519700 PROTEIN 170 331 - -
Sebi847g00006 582 SMART 26again6 258 285 IPR006564 GO:0008270
Sebi847g00006 582 Pfam SWIM zinc finger 248 282 IPR007527 GO:0008270
Sebi847g00006 582 Coils Coil 341 361 - -
Sebi847g00006 582 ProSiteProfiles Zinc finger SWIM-type profile. 245 283 IPR007527 GO:0008270
Sebi847g00006 582 Coils Coil 535 576 - -
Sebi847g00006 582 ProSiteProfiles Zinc finger GRF-type profile. 483 526 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi847g00006 Sebi-Chr847 83594 86618 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi847g00006 FAR1 2.8e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi847g00006 - - tpra:123913749 191.815