Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi844g00003 ATGAGTTCCCTTCATCCATCTCTTCCAATAGATCCTAGTAGTGATAATGAAACTAAACACAGATCAAAATCAGTTGTAACTGTCCTAGACATTGAGGCCTCAACACTGGAAATGAAAACTTTGAGAGCTCCAAGAAGGGATGGATCAGTTGAGACTCATCAAACAGAAGAGGGTATCTGCTTGACATGGAAAGATGTATGGGTGATGACTACTTCCAATAGAAAGGATGGAAGTAAATCAATTCTTCAAGGTCTAACTGGTTATGCCAAGCCAGGGCAGCTCTTAGCCATAATGGGTCCTTCTGGCTGTGGCAAGTCTACACTACTTGATACTTTAGCAGGGAGACTAGGCTCAAACACAAGGCAAACAGGGGAAATTCTTATCAATGGTCACAAGCAAGCACTAGCTTATGGAACCTCGGCATATGTCACTCAAGATGATACCTTACTAACAACCTTAACAGTTAAGGAAGGAGTGCATTACTCAGCTCAACTCCAATTGCCTGACTCCATGTCCAAGGCAGAGAAGAAAGAGAGAGCTGACTTTACAATCAGAGAAATGGGTCTCCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGTGTTAAAGGAATTAGTGGTGGTCAAAAGAGGAGAGTGAGCATTTGCATTGAGATCCTAACACGCCCTACACTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATTGCTACATTGGGTCAAAAAGATGGCATTTTGAGGACTATTATTACATCAATCCATCAACCCAGTACTGAAGTTTTTCAACTTTTCCATAACCTCTGTCTTTTGTCTTCAGGCAGAACAGTTTACTTTGGGCCTGCTTCTACTGCATGTGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCTACCCTTCAGAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGACCAGGATATTGAGGTGGGTTTAGCAGGGGCTGGAACAATACCCGCAGAAGAAGCAATCCGTATCCTTGTGAGCTCGTATAAATCTTCTGAATGGAACCAAGAAGTTCATAACGAAGTAACATTAATGTCGGCTAAAAAGGACAGCAGCTCCGTAGACAAAAAGAGAAGGCATGCAAGCTTCCTTACTCAGTGCTCAGTTCTTCTCAGAAGATCGTCCGTGAACATGTTTCGTGACATAGGCTATTATTGGTTACGCCTTGTCATATATGTTGCATTGGCTATAAGTTTAGGCACCGTTTTCTATGATTTGGGTACAAGTAATGACTCAATTAAGGATCGAGGTTCACTTCTCTCGTTTGTGGTTGGCTTCTTAACTTTCATGAGCATTGGTGGATTCCCTTCATTTGTAGAAGACATGAAGGTATTTAAACGTGAAAGACAAAATGGACATTATGGTGTTATTGCTTTTGTCATTGGGAACACCTTTTCAGCAATCCCCTACTTGTTATTGGTTACGGTGATTTCTGGAGCTATAGCTTATTACCTTCCTGGTCTTCAAAGAGAATGGGAGCGCATTTTGTACTTCTTTTGTGTTTTATTTTCTAGTATGATGTTAGTGGAGAGTCTTATGATGATAGTTGCTAGCATTGTCCCCAACTATCTAATGGGAATAATAACTGGAGCTGGAATTCAAGGAATGATGATTTTAGTTGCTGGCTTCTTCAAATTGCCAAATAATCTTCCTAAGCCATTTTGGAGATACCCAATACACTATATTGCCTTCCATAGGTATGCCTTCCAAGGATTGTTCAAAAATGAGTATGAAGGACTAAGATTTACCACAAATGATGATGAAGGAGGCTCACACAAGTACATTAGTGGTGAAGAGGTTCTAAGAAATACTTGGCAAACTAACATGAGTTACTCAAAATGGGTTGATGTTGCAGTTTTGCTAGGGATGATTGTTTTCTATCGGATTTTGTTCTTTATTATCATCAAGACTACTGAGAAGGTGAAGCCAATTGTTGGATCATTATCATGCATGTCAGTGTCTCCCAAGCAAACTATACAGGTGGTGGAGAACCCCAATGCCACACCTATACATGGAGAGGTATGA 2091 0.4032 MSSLHPSLPIDPSSDNETKHRSKSVVTVLDIEASTLEMKTLRAPRRDGSVETHQTEEGICLTWKDVWVMTTSNRKDGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGEILINGHKQALAYGTSAYVTQDDTLLTTLTVKEGVHYSAQLQLPDSMSKAEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPTLLFLDEPTSGLDSAASYYVMKRIATLGQKDGILRTIITSIHQPSTEVFQLFHNLCLLSSGRTVYFGPASTACEFFASNGFPCPTLQNPSDHLLKTINKDFDQDIEVGLAGAGTIPAEEAIRILVSSYKSSEWNQEVHNEVTLMSAKKDSSSVDKKRRHASFLTQCSVLLRRSSVNMFRDIGYYWLRLVIYVALAISLGTVFYDLGTSNDSIKDRGSLLSFVVGFLTFMSIGGFPSFVEDMKVFKRERQNGHYGVIAFVIGNTFSAIPYLLLVTVISGAIAYYLPGLQREWERILYFFCVLFSSMMLVESLMMIVASIVPNYLMGIITGAGIQGMMILVAGFFKLPNNLPKPFWRYPIHYIAFHRYAFQGLFKNEYEGLRFTTNDDEGGSHKYISGEEVLRNTWQTNMSYSKWVDVAVLLGMIVFYRILFFIIIKTTEKVKPIVGSLSCMSVSPKQTIQVVENPNATPIHGEV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi844g00003 696 Gene3D - 61 300 IPR027417 -
Sebi844g00003 696 FunFam ABC transporter G family member 11 59 350 - -
Sebi844g00003 696 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524|GO:0016887
Sebi844g00003 696 Pfam ABC-2 type transporter 265 319 IPR043926 GO:0140359
Sebi844g00003 696 Pfam ABC transporter 83 233 IPR003439 GO:0005524
Sebi844g00003 696 SMART AAA_5 91 280 IPR003593 GO:0016887
Sebi844g00003 696 Pfam ABC-2 type transporter 387 599 IPR013525 GO:0016020|GO:0140359
Sebi844g00003 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 299 IPR027417 -
Sebi844g00003 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 308 IPR003439 GO:0005524
Sebi844g00003 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 48 671 - -
Sebi844g00003 696 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi844g00003 Sebi-Chr844 44699 51744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi844g00003 81 293 Calmodulin-binding Proteins AT2G36910 28.959 3.60e-11 65.1