Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi843g00003 ATGAAGGAGGATGGTAACTCAGAGAAGGTTTCTGAGAGGAATTATCCTGCAATTAACATAACACACTCGGGGAGATTTAGAACTAAGTTGAGTTCATTTTCTGAGAAGTTCCAAAGGGGATTGGAATCTGGTTCTGAGAAGTTAAAGAGATTCAGGACATCATTTGAATCTTTTCCCTATAAGTATAATGGTGCTTTTTCTAGAAGCTTTGGTTCTAAAAGGAAAATTCTTGATCCACAGGGTCCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTATTATGTGTTATTGCAGTATCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGTGAAGAAATGTCTTTCATTGGACAGCAAGATGGAGATTACAGCAACTGTTTTAAGAACTTTCTCTGATGTTTTATATATAATCCACATGTTTTTCCAGTTCCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTTGTTGAAGATTCTTGGGCAATAGCTTGGAGGTATTTGTCATCATATTTCTTAGTTGACATTCTTGCGATTCTTCCACTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTTCAAATCACTCAATACAAAGAATTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCTCGTTTAGTACGGATAATTCCTTTATATAAAGAAGTTACGAGGACCTCTGGAATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTTGCAAGTCATGTAATTAAGAAAATATCCTCAATGCACATTTCCTTCTATGGTTCTACCTCACCCTCTCACTTCAAGGAATTGAAATCCTCTAGCACCTTTAGGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCGAAGCAATATAATGTGTAACAAGGCTGATATGTATTGTAACAACCAATGGGGAGGGTTGAGCAAAATTTCAACATTCCTGAATGCTTCTTGCCCAATAAACGACGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCTAGAGACTTTCCTCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGAATTGTTTATGATAGCTCGTTTCTATGTTGGCTGGCTCCTTTAGGGACAATTCTCTTCCTTTCAATGTGCATTCATGTTCAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCGATGTTTGGGAAATCTGTTTTGCAGTTTTCATTTCCATATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACGTATTTGCAGTCAACAACAACAAGGTTGGAGGAGATGAGAGTAAAAGGAGGGATGCTGAACAGTGGATGTCTCATCGATTGCTTCCTGATAGCCTGAGAGAAAGAATCAGACGATATGAACAATACAAATGGCAAGAAACTAGAGGTGTAGATGAAGACAATTTGATTCATAATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAGCAACTTTTGGATGCTATGTGTGACCGACTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGTGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACTATGACAACTAATGGTGGAAGAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGATTTCTGTGGAGAGGAGCTTCTGACATGGGCTTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAGACCCTTTCTGAAGTTGAAGCCTTCGCACTAAAAGCTGATGATCTGAAATTCGTGGCATCTCAGTTCCGGCGCCTCCACAGCAAGCAGTTGCGCCACACTTTCAGGTTCTACTCGCAGCAATGGCGGACATGGGCTGCGTGTTTCATACAAGCAGCCTGGCGGCGCTACAGTAGGAAGAAGCTTGAAGAGTCACTTGTTGAAGAGGAGAATAGGCTGCAAGATGCATTGGCAAAGGCTGGTGGTAGCTCACCAAGTCTAGGTGCCACAATATATGCTTCAAGGTTTGCTGCCAATGCACTCAGATTATTGCGTCGTAGCGGCACCAGGAAGACAAGGGTGCCGGAGAGAATACCCCCCATGCTGCTTCAGAAGCCTGCAGAACCTGACTTTACTGATGAAGAGCAATAG 2304 0.4141 MKEDGNSEKVSERNYPAINITHSGRFRTKLSSFSEKFQRGLESGSEKLKRFRTSFESFPYKYNGAFSRSFGSKRKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDVKKCLSLDSKMEITATVLRTFSDVLYIIHMFFQFRTGFIAPSSRVFGRGVLVEDSWAIAWRYLSSYFLVDILAILPLPQVVILIIIPKMRGFKSLNTKNLLKFVVFFQYVPRLVRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIKKISSMHISFYGSTSPSHFKELKSSSTFRVIGAFWYLFSIERETTCWQEACRSNIMCNKADMYCNNQWGGLSKISTFLNASCPINDEDKKLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKNLRIVYDSSFLCWLAPLGTILFLSMCIHVQFSWSEPGNKYRCLGNLFCSFHFHIWFGIIFIPHWKYADVFAVNNNKVGGDESKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSRKKLEESLVEEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRSGTRKTRVPERIPPMLLQKPAEPDFTDEEQ 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi843g00003 767 Gene3D Jelly Rolls 536 656 IPR014710 -
Sebi843g00003 767 FunFam Cyclic nucleotide-gated ion channel 1 536 654 - -
Sebi843g00003 767 Gene3D Helix hairpin bin 470 529 - -
Sebi843g00003 767 Pfam Cyclic nucleotide-binding domain 558 649 IPR000595 -
Sebi843g00003 767 SUPERFAMILY Voltage-gated potassium channels 78 388 - -
Sebi843g00003 767 Coils Coil 690 710 - -
Sebi843g00003 767 CDD CAP_ED 538 669 IPR000595 -
Sebi843g00003 767 MobiDBLite consensus disorder prediction 740 767 - -
Sebi843g00003 767 FunFam Cyclic nucleotide-gated ion channel 1 469 529 - -
Sebi843g00003 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 295 762 - -
Sebi843g00003 767 SMART cnmp_10 538 669 IPR000595 -
Sebi843g00003 767 ProSiteProfiles cAMP/cGMP binding motif profile. 538 622 IPR000595 -
Sebi843g00003 767 SUPERFAMILY cAMP-binding domain-like 472 660 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi843g00003 Sebi-Chr843 43966 50262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi843g00003 3 766 Ion Channels AT5G53130 67.315 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi843g00003 K05391 - gmx:100801032 1135.94