Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi842g00001 ATGGGAGGTTGCTGTTGTTCTGCAAAAAAACCTCATCAGCAAGGAACACCAGTGTATTACTATTACCCACCAACTTCTGAAGAGAGTGAGTCTTTAACCGCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGCTTGAACCTGGATGCATCCATACCTGATACTTTCCATCCCCCTCCTGTGCCTTTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACCGATTCTGAGTCTGGCAGAGAAACAGCTAGTGTTAGTAGCTATGAAACTTCAATGACACGTGAAGATATTGAAGAATCCGATTTCAAAGCTCCAGCAAAATCTGCACCTATATCTCCAAAGAAGGAAGCACTATCAAAAGCAAATGAAACTCAAGTATTAGTGATAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTTACCAGACAATGAATTAGTTTGA 582 0.4021 MGGCCCSAKKPHQQGTPVYYYYPPTSEESESLTANDGTNASLNAGFLVGLNLDASIPDTFHPPPVPLPYDMVLGGSASTDSESGRETASVSSYETSMTREDIEESDFKAPAKSAPISPKKEALSKANETQVLVIEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIFLPDNELV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi842g00001 193 SMART ring_2 140 180 IPR001841 -
Sebi842g00001 193 SUPERFAMILY RING/U-box 133 187 - -
Sebi842g00001 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Sebi842g00001 193 MobiDBLite consensus disorder prediction 73 114 - -
Sebi842g00001 193 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Sebi842g00001 193 CDD RING-H2_AIRP1-like 136 184 - -
Sebi842g00001 193 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 186 - -
Sebi842g00001 193 MobiDBLite consensus disorder prediction 76 96 - -
Sebi842g00001 193 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Sebi842g00001 193 Pfam Ring finger domain 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi842g00001 Sebi-Chr842 38584 40695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi842g00001 1 186 C3H Transcription Factor Family AT4G00335 54.301 1.01e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi842g00001 - - gmx:100812687 315.464