Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi841g00004 ATGGGAATTCTGTGCTTGTTGCATCTTCTGCTAACTTGGTATCTGTCCAACCCTTTGCTTGTTGGTGCTGGCTTCCAGGAACAAACTATACTACTTGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGATGTCAACAACTCAGATTACTGCTCTTGGCAAGGTGTCAGCTGTAATGATCACTCACTGGTGGAGAAGCTTGATCTCTCTCATCAGAATCTTCAAGGTAATATAACTTTGATGTCCAGGCTCAAATCTTTGCGGTGGCTTGACCTTTCAAATAACAACTTTCATGGATTGATTCCTCCTGTTTTTGGAAATTTATCTGACCTTGAATTTCTGGACATGTCATCAAACAAATTTGAAGGTTCAATTCCACCACAGTTTGGTGCTCTCAGGAGCCTCAAATCATTGAACCTTTCAAATAACTTGCTTGTGGGAGAAATACCAAAGGAACTTCAAGGTCTAGAGAATTTGCAGGAGTTTCAAATATCATGCAATCACTTGAGTGGTTTTATACCTTCTTGGGTGGGCAATTTGACCAATCTGAGAGTTTTTACTGCTTATGAGAATCATTTGGATGGCAGGATTCCAGATACTCTGGGATCAATTTCTGAGCTTCAAATACTTAATCTGCATTCAAACCACCTTGAAGGCCCAATACCAGCAAGCATTTTTTCTCCAGGGAAGCTACAAGTTCTGATAGCTTTAAATTTGAGCTTCAATCATCTCCATGGACCATTGCCCCCAGCATTAGGAAGACTAGACAAACTTGTTTCTCTGGATGTTTCAAACAATAATCTCTCAGGTAATATCCCAGATGAGCTTAAGCGAATGTTGAGCTTGATTGAGGTTAACTTCTCAAACAATCTGCTCAGTGGTCCAGTGCCATCATTTGTACCATTCCAGATGAGTCCTACTTCAAGTTTTTGGGGCAATGAAGGGCTTTGTGGGGAGCCATTGAACTCTTCATGCAGAGATCTTAATGATGATCAAAAGAATCACCATCACAGAGTTTCTTACCGAATCATAGTGGCCTTAATTGCATCAGGTATGGCAGTTTTTATATCAGTAACTGCAATTGTTTTGCTATTTAACATCAGAAAGGGGGATGCAAAGGTAGCAAATCATGCTGGGAGTGTTTTGGATGATGATCTAAGACAAGAAATAAACCTTGATGCTGTTGTTGAAGCAACTCTGACAAGCTCCAATCAGCTTAGCAGTGGCACTTTCAGTGTAGTTTACAAGGCAATCATGCCTTCTGGGTTGGTCTTATCTGTAAGGAGACTGAACTCCATGGACAATACAATAACCCACCACCTTCACAAGATGATTGAAGAACTTGAAGTGCTGAGCAAACTTTGTCATGATAATCTAATGCAACTCATTGGATATGTTATTTATAATGATGTTGCTCTTCTCATTCATCATTATTTACCCAATGGAACATTAGCTCAGCTTCTTCATGAATCTCCAAGAGAACCTGCATATCAACCTGACTGGCCAGTTAGACTATCCATTGCTATTGGAGTGGCAGAGGGTTTGGCTTTCCTTCATCAATTGGCAATCATCCACCTTGACATTTCTGCTAGCAATGTTCTCTTGGATGCAAATTCTAAGCCATTGATTGGGGAGATTGAGATATCAAAACTTCTGGATCCAACCAAAGGCACAAGCAGTATTAGTACAGTTGTAGGCTCCTTTGGTTACATTCCACCAGAATATGCATATACAATGCAAGTGACAAAAGCTGGAAATGTTTATAGCTATGGTGTGATTCTGCTGGAGATGCTTACAACTAAACCACCAGTTGGTGAGGCTTTGGATGAAGGTGTAGTAGATTTGGTGAAGTGGGTTAAGGGTGCTCCAGTGAGAAGGGAAACTCCAGGGCAGATATTGGATGGAAGGCTTAGCACAGTTTCATTTCGTTGGAGGAAAGAAATGCTTGCAGTTCTAAATGTGGCGTTGCTGTGCACTGACCATAGGCCAGCCAAACGACCAAAAATGAACGAAGTAGTAGAAATGCTCCAAAAAATAACTAATAGGGAGCAATGA 2055 0.4107 MGILCLLHLLLTWYLSNPLLVGAGFQEQTILLAINQELRVPGWDVNNSDYCSWQGVSCNDHSLVEKLDLSHQNLQGNITLMSRLKSLRWLDLSNNNFHGLIPPVFGNLSDLEFLDMSSNKFEGSIPPQFGALRSLKSLNLSNNLLVGEIPKELQGLENLQEFQISCNHLSGFIPSWVGNLTNLRVFTAYENHLDGRIPDTLGSISELQILNLHSNHLEGPIPASIFSPGKLQVLIALNLSFNHLHGPLPPALGRLDKLVSLDVSNNNLSGNIPDELKRMLSLIEVNFSNNLLSGPVPSFVPFQMSPTSSFWGNEGLCGEPLNSSCRDLNDDQKNHHHRVSYRIIVALIASGMAVFISVTAIVLLFNIRKGDAKVANHAGSVLDDDLRQEINLDAVVEATLTSSNQLSSGTFSVVYKAIMPSGLVLSVRRLNSMDNTITHHLHKMIEELEVLSKLCHDNLMQLIGYVIYNDVALLIHHYLPNGTLAQLLHESPREPAYQPDWPVRLSIAIGVAEGLAFLHQLAIIHLDISASNVLLDANSKPLIGEIEISKLLDPTKGTSSISTVVGSFGYIPPEYAYTMQVTKAGNVYSYGVILLEMLTTKPPVGEALDEGVVDLVKWVKGAPVRRETPGQILDGRLSTVSFRWRKEMLAVLNVALLCTDHRPAKRPKMNEVVEMLQKITNREQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi841g00004 684 CDD STKc_IRAK 406 679 - -
Sebi841g00004 684 Gene3D Phosphorylase Kinase; domain 1 368 478 - -
Sebi841g00004 684 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 479 684 - -
Sebi841g00004 684 ProSitePatterns Tyrosine protein kinases specific active-site signature. 523 535 IPR008266 GO:0004672|GO:0006468
Sebi841g00004 684 Pfam Protein tyrosine and serine/threonine kinase 401 676 IPR001245 GO:0004672|GO:0006468
Sebi841g00004 684 SUPERFAMILY Protein kinase-like (PK-like) 400 677 IPR011009 -
Sebi841g00004 684 Gene3D Ribonuclease Inhibitor 22 81 IPR032675 -
Sebi841g00004 684 Gene3D Ribonuclease Inhibitor 82 334 IPR032675 -
Sebi841g00004 684 SUPERFAMILY L domain-like 40 321 - -
Sebi841g00004 684 Gene3D Transferase(Phosphotransferase) domain 1 479 684 - -
Sebi841g00004 684 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515
Sebi841g00004 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 65 676 - -
Sebi841g00004 684 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 129 225 - -
Sebi841g00004 684 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 371 478 - -
Sebi841g00004 684 Pfam Leucine rich repeat N-terminal domain 42 59 IPR013210 -
Sebi841g00004 684 FunFam Leucine-rich repeat receptor-like protein kinase 233 327 - -
Sebi841g00004 684 FunFam Leucine-rich repeat receptor-like kinase 26 128 - -
Sebi841g00004 684 ProSiteProfiles Protein kinase domain profile. 400 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi841g00004 684 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Sebi841g00004 684 Pfam Leucine rich repeat 64 121 IPR001611 GO:0005515
Sebi841g00004 684 SMART LRR_typ_2 132 155 IPR003591 -
Sebi841g00004 684 SMART LRR_typ_2 204 228 IPR003591 -
Sebi841g00004 684 SMART LRR_typ_2 84 107 IPR003591 -
Sebi841g00004 684 SMART LRR_typ_2 108 131 IPR003591 -
Sebi841g00004 684 SMART LRR_typ_2 156 180 IPR003591 -
Sebi841g00004 684 SMART LRR_typ_2 255 279 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi841g00004 Sebi-Chr841 76460 79167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi841g00004 81 679 Receptor kinase-like Gene Family AT2G41820 58.766 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi841g00004 PK_Tyr_Ser-Thr 4.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi841g00004 - - adu:107492611 754.592