Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi841g00002 ATGGTGCATTTCTATCTCCCTTCTCTTCAATCGTTTTTACGGCAGCATTTGGGATGTGCGGGAAAGACTGATTACCGAGCCCGGATTCGGTTGATTAATCAGGACAAGAACAAGTACAACACTCCAAAATACCGCTTTGTGGTTCGATTTACAAACAAGGATATCATTGCACAGGTAGTATCTGCTAGCATTGCTGGTGATATTGTTCTCGCTGCTGCAGCATATGCACATGAACTGCCACGCTATGGTCTTCAAGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGACTCCTGTTGGCCCGTCGTGTCCTTAAGATGCTTGAAATGGATGAGGAGTATGAGGGAATGTTGAGGCTACTGGAGAGGATTTTTCAGTGGAACCTGCTGAGACTAGGAGGCCATTCCGTGCTCTCCTTGATGTCGGTCTTATTAGGACCACAACTGGCAACCGTGTCTTTGGTGCCCTTAAGCTCTAGATGGGGTTTGGATATTCCTCACAGTGAGAAAAGATTTGCCGGTTTTGATAAGGAGAAGAAGGATCTTGATGCTGAGACTTTGATGGAAGATGAACCAGAGAAGTACCAGTCACACTTTAGTGAATATATCAAACAAGGAATAGAGCCTGATGGAATTGAGGAGCTATACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCCCTGCAAAGAAATCTGAGAAGCAGCCACCAAAGGAACACAAGAGGATTAGCGGGGAATGTCTTTCCTCTGTTTGTGTTGACGTTGAAGTACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGGCTAAGTTGATCGCACGCTTGCAAGCTCTTAACTCTGCAGCTGGAGCCGCGGATGATGATGAGGACGATGAGTGA 882 0.4615 MVHFYLPSLQSFLRQHLGCAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQVVSASIAGDIVLAAAAYAHELPRYGLQVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGMLRLLERIFQWNLLRLGGHSVLSLMSVLLGPQLATVSLVPLSSRWGLDIPHSEKRFAGFDKEKKDLDAETLMEDEPEKYQSHFSEYIKQGIEPDGIEELYKKVHAAIRADPLQRNLRSSHQRNTRGLAGNVFPLFVLTLKYNLKKLTYEERKAKLIARLQALNSAAGAADDDEDDE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi841g00002 293 Coils Coil 262 282 - -
Sebi841g00002 293 SUPERFAMILY Translational machinery components 20 229 - -
Sebi841g00002 293 Pfam Ribosomal L18 C-terminal region 213 280 IPR025607 -
Sebi841g00002 293 PRINTS Ribosomal protein L5 signature 15 34 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 PRINTS Ribosomal protein L5 signature 80 100 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 PRINTS Ribosomal protein L5 signature 158 177 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 PRINTS Ribosomal protein L5 signature 38 57 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 PANTHER RIBOSOMAL PROTEIN L5-RELATED 21 282 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 Gene3D - 159 283 - -
Sebi841g00002 293 Gene3D - 16 135 - -
Sebi841g00002 293 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 20 118 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi841g00002 293 CDD Ribosomal_L18_L5e 36 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi841g00002 Sebi-Chr841 33299 35947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi841g00002 21 284 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 57.931 2.62e-101 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi841g00002 K02932 - nnu:104602713 298.13