Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi840g00019 ATGGAGGGGATAGGTCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAACAAGGCCACAAGAGCAACTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGTTATTACAACAACTATAGCCTCACACAACCAAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACAGAAGGTGGCTCTCTGAGAAATGTCCCAGTTGGAGGTGGTTCTAGAAAGAACAAGAAGGTCACCTCTGCCACAGCAGCTTCATCAAAAGTTCCAGACCTAAACCCACCAACCCTTTCATCACCTGTTTCTTCTCATCAAAACCCTAAAATGCATGGAGGCCAGGATCTTAATCTGGCTTTCCCAGCTATGGACAAGTATCATAGCAGCATGTCAAACCCTTATGTTGAGATGCACAATGGTGATACCAGTCACCAGAGCTCTTCTTCTGTTCCAACTTCTCTGTCTGCTCTGGAGCTATTAAGGTCTAGCATGGCATCTAGGGGCTTGAACCCTTATGCTCCTAATAATTCTTCCTTGATGGCAAACACTAATGGCCTTTACCCATCTGGCTTTCCCATGCAAGAAGTTAAACCAAGTATTGGCTTTTCAGTTGATGGGATTGGAAACAGATCATATGATCAGGTCCAAGAGAGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGATGTCAAGCAGCTTTCTGCAGGTAGTGCTGAAGTGGAACACAATAAAGAACAAGGAAATTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGTCATGGTAA 786 0.444 MEGIGPNSCARPVLEKKTRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSATAASSKVPDLNPPTLSSPVSSHQNPKMHGGQDLNLAFPAMDKYHSSMSNPYVEMHNGDTSHQSSSSVPTSLSALELLRSSMASRGLNPYAPNNSSLMANTNGLYPSGFPMQEVKPSIGFSVDGIGNRSYDQVQESGGGRLLFPFGDVKQLSAGSAEVEHNKEQGNSTGYWTGMIGEGSW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi840g00019 261 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Sebi840g00019 261 MobiDBLite consensus disorder prediction 76 110 - -
Sebi840g00019 261 MobiDBLite consensus disorder prediction 65 111 - -
Sebi840g00019 261 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 154 IPR045174 GO:0003700|GO:0006355
Sebi840g00019 261 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Sebi840g00019 261 MobiDBLite consensus disorder prediction 1 23 - -
Sebi840g00019 261 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi840g00019 Sebi-Chr840 289316 290101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi840g00019 16 261 C2C2-Dof Transcription Factor Family AT3G61850 49.455 8.87e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi840g00019 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi840g00019 - - gmx:778110 406.371