Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi840g00016 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGTTTGCACAAGGGTCCATGGACTCCTAGAGAAGATGCATTACTTACCAAATATATTCAAGCTCATGGAGAAGGCCAGTGGAAATCCCTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGACCAGACATAAAGAGAGGGAACATAACAGCTGAAGAAGATGATCTTATCATTAGAATGCATTCACTTCTTGGAAACAGATGGTCCCTCATAGCTGGAAGATTACCAGGACGCACAGATAATGAAATTAAAAACTATTGGAATACCCATCTCATGTATCTACCAAAACCCATTAGAGTTAAGGCTTTGTCTCTACCGAGAACGGATAGTGGTAATTCCTTCACAATGGAATCCAATTCATCAGCATGTGCATCAACGAGCCAAGAGAAAGAAGAAAGCCCAGGCCCAATAATAGATGACATGATTTATGACGTGGGAGAAAATGATGATTTTGGCATCTTTGGTGACGATCATGAACTAGTCAACCACATTGAATGCCAGTCTTATATTCCCACGGAACATGGTACTGGCACGCTAGAGAAACTCTATGAAGAGTGCTTGCAACTCTTGAACATGGACGATTGCCATTTCCAATTGGATTCCTTTGCTCAATCTTTATTGGAGGAATGA 693 0.4113 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLMYLPKPIRVKALSLPRTDSGNSFTMESNSSACASTSQEKEESPGPIIDDMIYDVGENDDFGIFGDDHELVNHIECQSYIPTEHGTGTLEKLYEECLQLLNMDDCHFQLDSFAQSLLEE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi840g00016 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Sebi840g00016 230 CDD SANT 16 61 IPR001005 -
Sebi840g00016 230 SMART sant 13 63 IPR001005 -
Sebi840g00016 230 SMART sant 66 114 IPR001005 -
Sebi840g00016 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 147 - -
Sebi840g00016 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi840g00016 230 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi840g00016 230 Gene3D - 14 66 - -
Sebi840g00016 230 Gene3D - 71 112 - -
Sebi840g00016 230 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi840g00016 230 MobiDBLite consensus disorder prediction 132 158 - -
Sebi840g00016 230 MobiDBLite consensus disorder prediction 132 153 - -
Sebi840g00016 230 CDD SANT 71 112 IPR001005 -
Sebi840g00016 230 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi840g00016 230 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sebi840g00016 230 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi840g00016 230 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi840g00016 Sebi-Chr840 243301 244384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi840g00016 1 112 MYB Transcription Factor Family AT5G49330 75.893 8.02e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi840g00016 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi840g00016 K09422 - gmx:778044 316.62