Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi840g00007 ATGGAATGCCCCTTCTTCCTTGTGAAGATGGAGGAAACTGGGATAGAGCTCAGAAGAAAAATGAAACAGAAAAGTTTGAAAGATGACGATCTGTATAGAGAGCTATGGAGGTTGTGTGCAGGACCTTTGGTGGATGTTCCTCGTAGGGGAGACAGGGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATCCCCCATTTCAATCTTCCCTCTAAGATTTTTTGCCGTGTGGTGAACATTCAGTTGTTGGCGGAACAAGAAACTGATGAGGTTTATGCTTGTATCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGCAGATCCTGATCCAACTCCTTCTGAGACTCCAAAACAGAAATTTCACTCCTTTTGCAAGATATTAACTGCTTCTGATACCAGCACACATGGAGGATTTTCAGTTCTGCGGAAGCACGCCACTGAGTGCCTTCCCCCATTGGACATGAGCCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATATAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGAGATGCTTTTGTTTTCTTAAGGGGAGAGCATGGAGAATTGAGAGTTGGTGTTAGGCGTTTAGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTTATATCAAGCCAGAGCATGCATCTTGGGGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTCATTGTTGGTTTGAACAAATATCTGGAAGCAGTCAACAATAAGTTCTCAGTTGGCATGCGTTTCAAAATGAGATTTGAGGGAGAGGACTCACCAGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTGTCTCCAGGATGGTCAAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCAGCAACTATTCCAAGGCCAGAGAGAGTTTCTTCTTGGGAGATAGAGCCTTTTATAGCCTCTCCTTCTCTGAATGTCACTCAACCAGTGCTGAAGGGCAAAAGATCTAGGCCAGCTGATGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTATAATGGATCATCCCAGGCTCATGAGCTTACCCAATTAGGTGGTGCTGCTGAAGTCCAAAGCAAAGAAAATCAGGTTGTATGCTCTCTGAGGCAGAAGGACATTAATAGCAACCCCATTAATACCAACTCCATCAGCTCTAGAGTCCGGGTGGAAGGAATATGGCCTTCTTCCCCACATTTGAATATAACTCCTAACCTTTATTCTGATCCCAAAAACAACAAAGGGGTTGCAGAACAATCACCTATCTCTGGTTATCCTACTGTTTCATCTAGACCAAGTGATGGCCCCCCACGTGATAGGGTGGTAGATGGGAAAAAGAGTGAGAATTCCTTAGATTGCTGGTTATTTGGAGTTAATTTGACTAACAACTCTAGCAATGTTATTACTCCTTCAGAGAAAGAAGTGGGGTGCCCATGTCCAACTATTGTTCCTAGTGGTCCCAAAGAATCTATGCCTGCTGCTGTTGCATGTGAAACTGAGAGGGTTCAGACCCCCAACAAGGGGCAGAAGCAAATTATTTCTGATACATCACCTAATGAATGGCAGAACAAGCAGGCCAGTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAATTGACTTGACCATGTTGAGTGGCTATGATGATCTCAGAGATGAACTTGAGAAATTGTTTGATATTAAAGGAGAGCTGCGTTTACAAGACAAATGGGCAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTGGGTGATGATCCATGGCTGGAGTTTTGCAACATAGTGAAGAGGATTTTGATTTGTTCAAGGGAGGACTTGAAGAAGATAAAATGCAAGGTACCTGCTGCTTCATCAGAGGTTGAAGAGACACTATTGAGCCCAGATTCACAGAATAGGGATGAGACTCAACAATCTCACATGCCTTGA 2127 0.4448 MECPFFLVKMEETGIELRRKMKQKSLKDDDLYRELWRLCAGPLVDVPRRGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKIFCRVVNIQLLAEQETDEVYACIALLPESDQTEPADPDPTPSETPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSPGWSNSQWRSLKVQWDEPATIPRPERVSSWEIEPFIASPSLNVTQPVLKGKRSRPADVSSSAASGFWYNGSSQAHELTQLGGAAEVQSKENQVVCSLRQKDINSNPINTNSISSRVRVEGIWPSSPHLNITPNLYSDPKNNKGVAEQSPISGYPTVSSRPSDGPPRDRVVDGKKSENSLDCWLFGVNLTNNSSNVITPSEKEVGCPCPTIVPSGPKESMPAAVACETERVQTPNKGQKQIISDTSPNEWQNKQASVPSMRTRTKVQMQGVAVGRAIDLTMLSGYDDLRDELEKLFDIKGELRLQDKWAVTFTDNENDMMLVGDDPWLEFCNIVKRILICSREDLKKIKCKVPAASSEVEETLLSPDSQNRDETQQSHMP 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi840g00007 708 MobiDBLite consensus disorder prediction 689 708 - -
Sebi840g00007 708 Gene3D - 585 677 - -
Sebi840g00007 708 FunFam Auxin response factor 134 238 - -
Sebi840g00007 708 SUPERFAMILY CAD & PB1 domains 584 665 - -
Sebi840g00007 708 Pfam AUX/IAA family 581 625 IPR033389 -
Sebi840g00007 708 Pfam AUX/IAA family 635 672 IPR033389 -
Sebi840g00007 708 SUPERFAMILY DNA-binding pseudobarrel domain 126 265 IPR015300 -
Sebi840g00007 708 CDD B3_DNA 134 236 IPR003340 GO:0003677
Sebi840g00007 708 MobiDBLite consensus disorder prediction 456 487 - -
Sebi840g00007 708 FunFam Auxin response factor 297 368 - -
Sebi840g00007 708 ProSiteProfiles PB1 domain profile. 589 670 IPR000270 GO:0005515
Sebi840g00007 708 SMART B3_2 136 238 IPR003340 GO:0003677
Sebi840g00007 708 Pfam Auxin response factor 262 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi840g00007 708 Coils Coil 613 633 - -
Sebi840g00007 708 Gene3D - 133 237 IPR015300 -
Sebi840g00007 708 MobiDBLite consensus disorder prediction 456 502 - -
Sebi840g00007 708 Gene3D - 297 369 - -
Sebi840g00007 708 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Sebi840g00007 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi840g00007 708 MobiDBLite consensus disorder prediction 684 708 - -
Sebi840g00007 708 Pfam B3 DNA binding domain 136 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi840g00007 Sebi-Chr840 118670 122459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi840g00007 31 676 B3 DNA Binding Superfamily AT4G23980 55.982 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi840g00007 AUX_IAA 1.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi840g00007 K14486 - gmx:100790981 1169.07