Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi83g00033 ATGGCCGCGGTTGCTGAGATTCCCGTTGATGCAGCAGCTGCTGCCATCAAATTGGACTCAAAACCAAAGCAAGAACCTGAATTCAATGTGCAGAACCTTGTTGACATTTTCACAAAGTTGAATCCTTTGGCCAAGGAGTTTTTCCCGTCATCTTATTCTCACCGCGATCAACTTCATCAGAGCTATAATCAGTTGTCACCCAACAAATTTCAGGTCAACAACAACCCATTAGCTAATGATCATCCCCCAAACAATCGAAGGAGAAGAAATAATTATAACCAAGGGGGAAGAAGATCTAATGGAAGAGTACTTAAGGCTCAGAGAGAAGATATCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCAAGTAACTGAGGAGCGGCTTGCTGCCTTATTCAGCTCTTGTGGTCCAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCAGATGATTACAGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTACTTGGATTCTATCCTGTCAGGGTCCTTCCTTCTAAAACTGCTATCCTTCCTGTGAATCCAACATTCCTTCCTAGGTCAGATGATGAGAGGGAAATGTGTTCCAGGACTGTCTACTGCACAAATATTGATAAAAAGATTTCTCAGGCTGAAGTCAAGAAATTTTTTGAAATATCTTGTGGTGAGGTTACTCGTTTAAGGCTTTTAGGAGATAATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCGCTTAGTTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTCAGGTTTGGTCCCTTTACTAGAGAGGATAACTTCGGTTATGCAGATTTCCACTAA 894 0.4195 MAAVAEIPVDAAAAAIKLDSKPKQEPEFNVQNLVDIFTKLNPLAKEFFPSSYSHRDQLHQSYNQLSPNKFQVNNNPLANDHPPNNRRRRNNYNQGGRRSNGRVLKAQREDIIRRTVYVSDIDQQVTEERLAALFSSCGPVIDCRICGDPHSVLRFAFVEFADDYSARAALNLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKKFFEISCGEVTRLRLLGDNVHSTRIAFVEFAMAESAIIALSCSGMLLGTQPVRFGPFTREDNFGYADFH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi83g00033 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
Sebi83g00033 297 SUPERFAMILY RNA-binding domain, RBD 201 285 IPR035979 GO:0003676
Sebi83g00033 297 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Sebi83g00033 297 CDD RRM1_CID8_like 112 191 IPR034823 -
Sebi83g00033 297 Gene3D - 204 282 IPR012677 -
Sebi83g00033 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Sebi83g00033 297 Gene3D - 59 190 IPR012677 -
Sebi83g00033 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Sebi83g00033 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 278 IPR000504 GO:0003723
Sebi83g00033 297 FunFam Polyadenylate-binding protein-interacting protein 10 205 283 - -
Sebi83g00033 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 37 279 - -
Sebi83g00033 297 CDD RRM2_CID8_like 207 284 IPR034825 -
Sebi83g00033 297 MobiDBLite consensus disorder prediction 69 103 - -
Sebi83g00033 297 Pfam Ataxin-2 C-terminal region 36 51 IPR009818 -
Sebi83g00033 297 SUPERFAMILY RNA-binding domain, RBD 77 190 IPR035979 GO:0003676
Sebi83g00033 297 SMART rrm1_1 212 283 IPR000504 GO:0003723
Sebi83g00033 297 SMART rrm1_1 115 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi83g00033 Sebi-Chr83 1727093 1737401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi83g00033 113 290 Eukaryotic Initiation Factors Gene Family AT1G34140 26.374 7.65e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi83g00033 - - lja:Lj3g3v0409470.1 437.958