Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi83g00010 ATGCAGATTTTTGTGAAAACATTGACCGGTAAGACCATCACCCTTGAGGTGGAGAGTTCAGATACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAAAGGCTTATCGTTGCCGGTAAGCAACTGGAGGATGGCCGTACCCTTGCAGATTACAATATCCAAAAGGAATCCACCCTCCACCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTTGTTAAGACCTTGACAGGGAAAACCATTACCCTCGAGGTTGAATCCTCTGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAGCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGAACCCTTGCTGATTATAACATTCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGTTTGAGAGGTGGCATGCAGATATTTGTCAAGACCTTGACGGGAAAGACAATCACTTTGGAGCAACTTGAAGATGGAAGAACCCTCGCTGATTACAATATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGATTGAGAGGTGGGATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTTGAGGATGGAAGAACCCTTGCTGATTATAACATTCAGAAGGAGTCCACTCTCCACTTGGTTTTGCGGCTTCGTGGTGGCATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACTATAACATTGGAGGTGGAAAGCTCCGATACAATTGATAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGACTTATTTTTGCTGGCAAGCAATTGGAAGATGGTCGAACATTGGCAGATTACAACATCCAGAAGGAATCCACCCTGCATCTTGTCCTTCGCCTTCGTGGTGGCTTCTAA 1050 0.4667 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIVAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi83g00010 349 ProSiteProfiles Ubiquitin domain profile. 170 196 IPR000626 GO:0005515
Sebi83g00010 349 SMART ubq_7 197 268 IPR000626 GO:0005515
Sebi83g00010 349 SMART ubq_7 273 344 IPR000626 GO:0005515
Sebi83g00010 349 SMART ubq_7 153 192 IPR000626 GO:0005515
Sebi83g00010 349 SMART ubq_7 1 72 IPR000626 GO:0005515
Sebi83g00010 349 SMART ubq_7 77 148 IPR000626 GO:0005515
Sebi83g00010 349 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Sebi83g00010 349 FunFam Polyubiquitin 3 197 272 - -
Sebi83g00010 349 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sebi83g00010 349 ProSiteProfiles Ubiquitin domain profile. 197 272 IPR000626 GO:0005515
Sebi83g00010 349 FunFam Polyubiquitin 3 1 76 - -
Sebi83g00010 349 CDD Ubl_ubiquitin 1 76 - -
Sebi83g00010 349 FunFam Polyubiquitin 3 77 152 - -
Sebi83g00010 349 ProSiteProfiles Ubiquitin domain profile. 273 348 IPR000626 GO:0005515
Sebi83g00010 349 SUPERFAMILY Ubiquitin-like 152 196 IPR029071 -
Sebi83g00010 349 Gene3D - 1 76 - -
Sebi83g00010 349 Gene3D - 168 196 - -
Sebi83g00010 349 Gene3D - 197 272 - -
Sebi83g00010 349 Gene3D - 77 154 - -
Sebi83g00010 349 Gene3D - 273 349 - -
Sebi83g00010 349 PANTHER UBIQUITIN 169 200 - -
Sebi83g00010 349 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Sebi83g00010 349 ProSitePatterns Ubiquitin domain signature. 223 248 IPR019954 -
Sebi83g00010 349 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Sebi83g00010 349 CDD Ubl_ubiquitin 273 348 - -
Sebi83g00010 349 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sebi83g00010 349 Pfam Ubiquitin family 275 346 IPR000626 GO:0005515
Sebi83g00010 349 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Sebi83g00010 349 Pfam Ubiquitin family 169 194 IPR000626 GO:0005515
Sebi83g00010 349 Pfam Ubiquitin family 199 270 IPR000626 GO:0005515
Sebi83g00010 349 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sebi83g00010 349 ProSitePatterns Ubiquitin domain signature. 299 324 IPR019954 -
Sebi83g00010 349 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sebi83g00010 349 SUPERFAMILY Ubiquitin-like 195 272 IPR029071 -
Sebi83g00010 349 FunFam Polyubiquitin 3 273 348 - -
Sebi83g00010 349 CDD Ubl_ubiquitin 77 152 - -
Sebi83g00010 349 CDD Ubl_ubiquitin 197 272 - -
Sebi83g00010 349 PRINTS Ubiquitin signature 129 150 IPR019956 -
Sebi83g00010 349 PRINTS Ubiquitin signature 87 107 IPR019956 -
Sebi83g00010 349 PRINTS Ubiquitin signature 108 128 IPR019956 -
Sebi83g00010 349 SUPERFAMILY Ubiquitin-like 272 348 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi83g00010 Sebi-Chr83 336247 337393 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi83g00010 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 7.14e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi83g00010 K08770 - dcr:108227972 564.688