Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi838g00006 ATGGATTTTAATAGTGATGATTCAGCTGTTAATTTTGAGGATGATAGAGACGTTAGTTATAGTGAGTCTTCTAGCAGTGATGAAATGAGTAGTGAAAATGATATACATAGTGTTGAGGAAAATGTGTCTAACGTTCAAGCAGAGGCTGATATGGATGATGAGAATGATGTTATGGATACAGATGTTAGAGAGGATGTGTCAATGAGGATAATAGACTTGACAAGAGCTGATATATTGGCTCTGGATTTCTCTACTGAAAACGATGCGTTCAATTTTTATTTTTCTTATGCGAGATGTCATGGATTTGCTATAAGGAAGGATGATAGAATTCGAGACAGTGAAGGAATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGAAAAAAGGAACACATACCTCTTACCCGTACCAACTGTCTAGCTAAGTTGAGAGTTAGGTTTGATTATAAGTCTGCCAAATTCAAGGTTGTTTCATTTGAAGACTCTCACAATCATGATTTAACCCCTGCTAAGTTTGTACCTCTAATTCCTGCATATCGGGGATTGACTAATGGGGACAAAGCCCAAGTGGATGCATTGCATTCTCATGGTGTTAGACCTTGCCAGATAACGGGTTTTCTTGTTGATCAGAAAGGAGGCTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTATAACTACATTGATGAGGTTATGCGTGGTAAGATCAAGGATGGGGATGCAGTTGATGGCTTAAGTTATTTGCAAGGAAAGGCAGATAATAATCCAATGATGTTTTCGGAAGCAATGTTCAACAAGCATCCAACTGCAGTGGTTACTAATGGAGATGGTGCTATGAGGGATGCTATTAAGGTAGTATTTCCAAATGCGTGTCACAGGTTATGTGGGTGGCATTTGAATAAGAATGCATGTGAAAATGTTAAGAATCCAAAATTTTTGGATGATTTCAAGAAAGCAATGTATAGTAATTTCACACCAAATCAATTTGAAGAGTTTTGGGAGGAAATGGTAAGTAAACATGGTCTACAAGGAAATAGGTGGGTTATGAAAACCTACGATATGAAGGAAATGTGGGCGACTGCATATTTACGTGATAAATTCTTTGCTCGCATTAGAACTACATCTCAATGTGAAGGCATTAATTCACTAATAAAGGCTTATGTTAGGAGTAAGAATACGATTATTGAATTTATTCATAATTTTGAGAATTCTCTTAGGGAATACAAGTACAAAGAATTGTCTTCTGACTTTAATTCTCTTTATTTTGAACCTGTTCTTACTACCTCACTTCAGAAGATAGAGCGTCAAGCTTCGAAGGTGTTCACTTTGGATATTTTTAAAGATGTCAAGTATGAGATTGAAAGGGCAGGTGCTTTAAATGTAATGGAGCGTTCACTTGAAGGGGATAATGTTGTTTTCAAATTAAATGAATATTATGGTTTGGATGAGGTAGAACCTGACATGATGATGGTTTGCCGATTTGTAGTTGCTAACTCTCATTGGGCCCCTATGAAAAAAAGGAAGAGGCGTAAGAGTAAGAGGTGTTCAAACTGTAAAATATCTGGACATGTTATCACTACCTGTCCTAGTTTGGTTCTACCAGAAGATGATGAAGTCAACATTAATGATGAAGACTATGGTCCTGAATCACAAAGTCTTAGGAGGGATGCAGCCCAAAACCATGATGGAGTTTCATCAGATGAAAATTTCCCTGACAGTAGCTCTAATCATGTGTCTAGAAGCATTAGTCAGAGTATGGAGAATCGTTCAAGTACCGATAAAAGGACTTTTCAGAAAAAGAAGATGAAGTCCCTTTCACAGATTTCAGACACGCAAGAGGAAGTTAAGCCTATTCCCACTGAATGCAAAGCAAATGAAGTGTTGAATGGTCCCCATAAAGTTGGTGGAGAAACTGCAGGTCCATCATCCACAACAAAGCAGGAAGTTCAAGAAGGGGATTTTGTGAATCGCCCTGATCAAAATGGTACATTTAGATCTTCCTATCCAAACCCTGTATCTGCACCATTTTTCAGCTACCAGTTACCAATTGTGGGACCTTCTTCTGTTGGAAACATACAAATACGCGAGGGAACTGAAGATGGTAGTAGGCCTGGTGTTTGGAATGATTTACTCCAAGAAGTCATTAGAAAAAGTGTTGGTCCAGGTGAAAATACTGGAAAAAATGATGAAATAATTGTTAGACTGTTGATTTGA 2253 0.3768 MDFNSDDSAVNFEDDRDVSYSESSSSDEMSSENDIHSVEENVSNVQAEADMDDENDVMDTDVREDVSMRIIDLTRADILALDFSTENDAFNFYFSYARCHGFAIRKDDRIRDSEGMVIMRQYLCSRAGLRDKKHLIRLDRKKEHIPLTRTNCLAKLRVRFDYKSAKFKVVSFEDSHNHDLTPAKFVPLIPAYRGLTNGDKAQVDALHSHGVRPCQITGFLVDQKGGYRNVGFSKKDLYNYIDEVMRGKIKDGDAVDGLSYLQGKADNNPMMFSEAMFNKHPTAVVTNGDGAMRDAIKVVFPNACHRLCGWHLNKNACENVKNPKFLDDFKKAMYSNFTPNQFEEFWEEMVSKHGLQGNRWVMKTYDMKEMWATAYLRDKFFARIRTTSQCEGINSLIKAYVRSKNTIIEFIHNFENSLREYKYKELSSDFNSLYFEPVLTTSLQKIERQASKVFTLDIFKDVKYEIERAGALNVMERSLEGDNVVFKLNEYYGLDEVEPDMMMVCRFVVANSHWAPMKKRKRRKSKRCSNCKISGHVITTCPSLVLPEDDEVNINDEDYGPESQSLRRDAAQNHDGVSSDENFPDSSSNHVSRSISQSMENRSSTDKRTFQKKKMKSLSQISDTQEEVKPIPTECKANEVLNGPHKVGGETAGPSSTTKQEVQEGDFVNRPDQNGTFRSSYPNPVSAPFFSYQLPIVGPSSVGNIQIREGTEDGSRPGVWNDLLQEVIRKSVGPGENTGKNDEIIVRLLI 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi838g00006 750 MobiDBLite consensus disorder prediction 23 39 - -
Sebi838g00006 750 Pfam MULE transposase domain 272 315 IPR018289 -
Sebi838g00006 750 Pfam FAR1 DNA-binding domain 91 181 IPR004330 -
Sebi838g00006 750 PANTHER OS01G0519700 PROTEIN 272 479 - -
Sebi838g00006 750 MobiDBLite consensus disorder prediction 1 39 - -
Sebi838g00006 750 MobiDBLite consensus disorder prediction 566 604 - -
Sebi838g00006 750 MobiDBLite consensus disorder prediction 651 682 - -
Sebi838g00006 750 SUPERFAMILY Retrovirus zinc finger-like domains 511 544 IPR036875 GO:0003676|GO:0008270
Sebi838g00006 750 MobiDBLite consensus disorder prediction 552 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi838g00006 Sebi-Chr838 126028 129404 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi838g00006 FAR1 3.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi838g00006 - - vvo:131613837 454.136