Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi834g00003 ATGCGTAAAGAATCAGAGGTTGGGATGGATTATGATGATGCAGAAGATATTCTTCCTGCAGAAACTGGGCCAAGAAAAGTCAATGCAAGATATGCCAAGACTTCATTTTGTGAGGATAAAGAAGCTATGAAATTTGTTTCAGCATCAAATGCTGTGAACCAGCCTGGTAACTCTATTTCATATGTTAAAAATACAGAGAGCACTGAGGGTGGTGATGTTGATAGAAATGGAGATGATTGTTGCCTCTGTGGTATGGATGGAAACCTGCTTTGCTGTGATGGTTGTCCCTCTGCTTATCATACTAGGTGTATTGGTGTGATGAAAGTGCAAATACCAGGAGGATCATGGCTCAATGTTGACAAAGATGAATTTCATCTTAAATATTACAATCAGAATGACATTCCTAAAGTGATCCAAGTACTCTATGAATCCATGCAGCATAGACCAATATACTATGGTATTTGCATGGCAGTGCTACGATATTGGAGTATTCCAGAAAATTTCTTACCTCTTTCTGTTTCAGCTGGAATAAATGTAAACCCAACAAATATTAAGGAAGAGGCAAAATTCTCTACTTCATTACTTCCTCCTCTAAGTGAAGACAACCAAAAACCTGTTAGTTTGGTGAAGGGAGAATACCCTCCAACTGACAGTGATAATATGGTGCCGCAACTTGATGCTTCATCAGTTATCACTCAAAGTCCTGCTCCTGAAAGCAGTGACAATGCTAGTAGTAAAGAGTGCCCTACTGTGGATATGAAGCTTCCTGAGGAAACCAGGACTGAGTCAGTCATTTCAGCTGGTTCTGGTTCTGTTTCTGTGAGTCATCAGTCTGACATACACTATCACAATTCTGTTAATATGTCAACTGCAGCTGATCCTGCTAAATGCTCTTTGGTAAACAGCTGGTTTAGTAATAATGGTCATGCAAATGATATGGGGTTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAACACCCAAGGCGGTTTTGGAAAGTGTGAACTCAATGTAACTAGCGATTTTGGGTACATGGGTTCCTCCTATAAACCTCTGTCTTACATAAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAACTTGCCATTCTTTCTTCAGAGGAATCTAGGTCAGAGGGTCATGTGTCAGACAATCAGAGGAAAACTGCATCTGCAATCACTTATCTTCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCCAGTTCTGAGAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCTAGCAAAAGAGGATGCATGTTAAATCATGCTGTTATAAGTGCCACAAAAAGTGCTACAAAAATCCTTGCTGGTTTTTCTCCCTTAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACTTACATTATATACATGGAGGAATGTTTACACGGTTTAATAGTTGGGCCCTTCCTAAATGCAAGCTATAGAAAGCAATGGCGTAAGCAAGTGGAACAAGCTACAACATTTAGTGCTATCAAACCGCTTTTACTTAAACTTGAGGAGAACATTCGAATCATTGCCTTTTCTGGGGACTGGGTTAAGCTGATGGATGATTGGTCAGTTGAATTTCCCATGATACAAAGTGCTGCATCTACTCTTGGAACAACTCAGAAACGTCCACCAAGTGGGAGGCGTTACAAGAAGAGGTCATCTGTTGATGAAGCTACAACTGATGGTTGCCATGAAAACTTTGTGTGGTGGCGTGGTGGCAGATTTGCTAAATTTATATTCCAGAAAGCGACATTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTGAAAAAAATTGCTGGTATTTTCTATGCTGATGGCTCTGAAATTCCTAAAAGAAGCAGGCAACTTGTTTGGAGATTTGCAGTCCAATTGAGCAGGAATGCATCACAGCTAGCACTTCAGGTCAGATATCTAGATTTTTACCTCAGATGGAGTGATCTAATTCGTCCCGAGCAGAACATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGTTTTCAGAAATGCAAATATTTGTGACACAAGATTTGTAGAGGGAAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGGGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTGCAGAAGGAAAGGAGAAGTATTGGTTTTCTGAAACACGCATTCCTTTATACTTGATAAAAGAATATGAAGAAGCTAATGAAAAAGTTTCATGTGATGAAGAGCACTATAGTGATGCATTTCCGTTGCACAGAAGGCGATTGAAAGTTACCTGCAAGAACATATTTTATTACCTTACCTGCAAGAGAGACAACTTGGACATATTCTCATGTTCTGGATGTCAGATGGATGTTTCAATTCGGTATGCTCACAGGTGTGGTGCATGTCAAGTCTCTACAAACAAGGAATTTGGGTACATGACCACATGCAAACAGTGTTACCATGCCATGTTACTTGCTCCAAAAGGGACTAATAATGAATCTCCAACCAGTCCCTTACTCTTACAAGGTCGAGAAAATGGCTCTGGGACTGTTTCTAATGGACCGAGGACAAAGGCTAGTCATCCTGACATGAAACAAGCTACTTCAGTGACAGTTTTGAAGGGACCAAGGCCTAAACGTCATGATCAAACACCGAAAACTACCAGGATAAAGAATAGCCATCCTGGAACAAAACAAGTTGCTTCTGATTCTGCAAAAAGCCGTCGCAAGAATTGTTCTTGGGGTCTTATATGGAAAAAGAAAGGTAATGAAGATATTGACATTAATTTTAGGACCAAAAACATACTTTTAAAGGGTGGATCTGGGATGCCTCAATCGTGTTTGGAACCACCTGTTTGTCACTTGTGCCGCAAGCCATATAGGTCTGATCTAATGTATATTCGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTCTGGATTTATTGGGCTTCAAATGTTGCAAGTGTCGTAGGATAAAATCACCTGTATGTCCTTACTTTGAGCCTAAGGAGGGTAAGAAATCACACACAAGGGCTTCAAAGAAAGAGCATTCAGGAGCAGATTCTGATTCTGGAACATTTACTGATATGAAAGAGCGTGAACCTGCTACTCCCGTCTTTCCTGTGGAGGACGATCCTTTACTTTTCTCTCTTTCAAGTGTTGAGCTGATTACAGAACCTAAGTTAGATGTGGATGCTGAGTGGAACACTGTCTCTGTGCCTGGGCTTCAGAAACTACCAGTGAGAAGGCATGTTAAGCGTGAGGGGGATGGTGATGGTTCTGTTGGAGGTATACCTTTAGATGCTGAATTCTCAACACACAATGAAGCAGGTAATCTGTCCAAATCTGCAGATTCATTATCACCTTTAGAATATGACCCTGCTATGCACTTTGACAGCAATTTACTGAACAACTCTGAAAGTCTAAATTATGAATGCATGGAGTTTGAACCCCATACCTACTTCTCTTTAACGGAACTGCTGCACCCAGATGATGGTAGCCAGTTTGAGGGAGTTGATGTGTCTGGGGACTTGTCAGGATATTTGGGAAGTTCTGGTACCCTTGTTCCTGAAAAATGTGGAGGTGTTAGTTCAATCGATAAATCAGAACCTGCAATTTCCTTACAAGATAGTGATTATAGTTGTCAGAAATGTTCACAAATGGATCCAGTCCCTGATCTCTGTTGTAAGTTTTGTGGGATTTTGTTTCACAGCCAATGTTCACCTTGGGTGGAATCACCATCTGGGCTTGGAAATTGGAGGTGTGGGAATTGCCGGGAATGGCAATAG 3882 0.4104 MRKESEVGMDYDDAEDILPAETGPRKVNARYAKTSFCEDKEAMKFVSASNAVNQPGNSISYVKNTESTEGGDVDRNGDDCCLCGMDGNLLCCDGCPSAYHTRCIGVMKVQIPGGSWLNVDKDEFHLKYYNQNDIPKVIQVLYESMQHRPIYYGICMAVLRYWSIPENFLPLSVSAGINVNPTNIKEEAKFSTSLLPPLSEDNQKPVSLVKGEYPPTDSDNMVPQLDASSVITQSPAPESSDNASSKECPTVDMKLPEETRTESVISAGSGSVSVSHQSDIHYHNSVNMSTAADPAKCSLVNSWFSNNGHANDMGLPMNFSLQTKENTQGGFGKCELNVTSDFGYMGSSYKPLSYINYYMHGDFAASAAAKLAILSSEESRSEGHVSDNQRKTASAITYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAVISATKSATKILAGFSPLRSGEGILPSIATYIIYMEECLHGLIVGPFLNASYRKQWRKQVEQATTFSAIKPLLLKLEENIRIIAFSGDWVKLMDDWSVEFPMIQSAASTLGTTQKRPPSGRRYKKRSSVDEATTDGCHENFVWWRGGRFAKFIFQKATLPKSMVRKAARQGGLKKIAGIFYADGSEIPKRSRQLVWRFAVQLSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASVFRNANICDTRFVEGKSCYGIAFGSQKHLPSRVMKNVVEIEQGAEGKEKYWFSETRIPLYLIKEYEEANEKVSCDEEHYSDAFPLHRRRLKVTCKNIFYYLTCKRDNLDIFSCSGCQMDVSIRYAHRCGACQVSTNKEFGYMTTCKQCYHAMLLAPKGTNNESPTSPLLLQGRENGSGTVSNGPRTKASHPDMKQATSVTVLKGPRPKRHDQTPKTTRIKNSHPGTKQVASDSAKSRRKNCSWGLIWKKKGNEDIDINFRTKNILLKGGSGMPQSCLEPPVCHLCRKPYRSDLMYIRCETCQNWYHAEAVELEESKILDLLGFKCCKCRRIKSPVCPYFEPKEGKKSHTRASKKEHSGADSDSGTFTDMKEREPATPVFPVEDDPLLFSLSSVELITEPKLDVDAEWNTVSVPGLQKLPVRRHVKREGDGDGSVGGIPLDAEFSTHNEAGNLSKSADSLSPLEYDPAMHFDSNLLNNSESLNYECMEFEPHTYFSLTELLHPDDGSQFEGVDVSGDLSGYLGSSGTLVPEKCGGVSSIDKSEPAISLQDSDYSCQKCSQMDPVPDLCCKFCGILFHSQCSPWVESPSGLGNWRCGNCREWQ 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi834g00003 1293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 125 IPR013083 -
Sebi834g00003 1293 PANTHER PHD FINGER FAMILY PROTEIN 34 116 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 221 247 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 195 262 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 559 578 - -
Sebi834g00003 1293 SMART PHD_3 1245 1290 IPR001965 -
Sebi834g00003 1293 SMART PHD_3 973 1021 IPR001965 -
Sebi834g00003 1293 SMART PHD_3 79 117 IPR001965 -
Sebi834g00003 1293 SUPERFAMILY FYVE/PHD zinc finger 968 1027 IPR011011 -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 1033 1062 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 852 888 - -
Sebi834g00003 1293 SUPERFAMILY FYVE/PHD zinc finger 50 117 IPR011011 -
Sebi834g00003 1293 Gene3D Cupin 970 1078 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 852 928 - -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 1033 1061 - -
Sebi834g00003 1293 SUPERFAMILY FYVE/PHD zinc finger 1240 1291 IPR011011 -
Sebi834g00003 1293 MobiDBLite consensus disorder prediction 910 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi834g00003 Sebi-Chr834 184219 194165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi834g00003 2 1293 PHD Transcription Factor Family AT5G35210 39.072 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi834g00003 - - lang:109351702 1756.11