Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi834g00002 ATGGAACCCCCGGTTGCGAGATCGAGGGGTCGCCCGAGGAAACGAAGAAAAGAGGACGAAAATGAAGGGAAATCGGTTCCTGAAGCAAAAAGGACGAGATCGATAGCATTGGTTGGGCGATATGTGCTGAAAGAGTTCCCCAGAAATGGAGTTTTTCTCGGTAAAGTTGTATATTACGAGTGTGGGTTGTATAGAGTCAATTACGAGGATGGTGATTCTGAGGATTTGGATAGCGGTGAGGTTCGTGCGATACTTCTCAGTGATGGTGATTTCAATGGTGATTTAGCAAAGAGGAAAGGCAAATTGGAGGAATTAGTGTTACGGAATAGTTTAAAGGCTGCAGAGGTGTCGAAAAAGGACCCGAACAAAGAGGAATCAGCTGTTGAAGTGCCTGTTTCGAATGAATTGAACGGTGGATTATCGGTTGGAAACAATGAGGGAGAAGATGATGAAGCGGATGCTGATTCGTCGAGTGAATCAGGCATGGGTTTAAGGGAAAAGGATTCTGGGTCTGATGCTGAGACGCCGTTACTGCCACCGCCGTTGCAGTTGCCACCGTCGTCAGGGACTATTGGCGTGCCTGATAAATGTGTTTCACACCTGTTTGCTGTTTATGGATTCTTACGATCATTCAGCACTCGCCTGTTTCTACTACCCTTTTCTTTGGATGAGTTTGTTGGTTCTCTTAATTGCCAAGTCGCGAACACCTTGTTTGACGCCATTCATGTTTCCCTACTGAAGATGTTGAGGCGCCATCTTGAAACCCTCTCATCTGAGGGCTCAGAGCTTGCATCGCAATGCCTTAGGTGCTAA 813 0.4662 MEPPVARSRGRPRKRRKEDENEGKSVPEAKRTRSIALVGRYVLKEFPRNGVFLGKVVYYECGLYRVNYEDGDSEDLDSGEVRAILLSDGDFNGDLAKRKGKLEELVLRNSLKAAEVSKKDPNKEESAVEVPVSNELNGGLSVGNNEGEDDEADADSSSESGMGLREKDSGSDAETPLLPPPLQLPPSSGTIGVPDKCVSHLFAVYGFLRSFSTRLFLLPFSLDEFVGSLNCQVANTLFDAIHVSLLKMLRRHLETLSSEGSELASQCLRC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi834g00002 270 PANTHER PHD FINGER FAMILY PROTEIN 32 270 - -
Sebi834g00002 270 CDD Tudor_AtPTM-like 38 86 IPR047365 -
Sebi834g00002 270 MobiDBLite consensus disorder prediction 13 29 - -
Sebi834g00002 270 SMART testlast3 195 255 IPR018501 -
Sebi834g00002 270 MobiDBLite consensus disorder prediction 1 29 - -
Sebi834g00002 270 MobiDBLite consensus disorder prediction 115 188 - -
Sebi834g00002 270 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Sebi834g00002 270 Pfam DDT domain 196 252 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi834g00002 Sebi-Chr834 182701 183513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi834g00002 16 270 PHD Transcription Factor Family AT5G35210 46.484 2.43e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sebi834g00002 DDT 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi834g00002 - - lang:109351702 315.079