Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi834g00001 ATGGAGGACTTGAACCAAAACGTTACTTTCACTGACTCTCCAAGCCCCACTCTGAACAAACCACAAACCAACTATGAGACACCCGTGCAACCCAACTATGGCGAAAACAACGCCGCACTGGAAGGTGTCGGAGTTGAGAATGTTGTCTCTGGCTCAGTTATCTCCGGAGCACAGTCCCAGGGATCGGAACCAGCGGTGAAGAGGGGAAGGGGAAGACCCAGGAAGTACGATGTTAATGGGAACAGGCTGTCTTCTTCGGCAACGCCACCACCGCCGCCTGGATTTGACATTCAGCCTTACGCTGAAAGTGTTGTCAAGAGAGGCAGGGGACGCCCTCGTGGCACTGGAAAACTGCAGATTCTGGCCTCCATGGGTGGGTATGTTGCAGAAACAGCTGGGGGAAGCTTCATACCTCATGTGCTGACTGTGAACACTGGGGAGGATGTGGTCAACAAGATAATATCATTTTTTCAGAAAGGCCCTCGCTCAGTTTGCATACTCTCTGCTACTGGTCCTGTATCAAGTGTCACCATTCGCCAACCTGGTCCTATTGGTGGTTTTTTGAGATATGAGGGCATCTTCCAGATTTTATCTCTATCTGGCTCATGTACCTACACTGGTGCTGGTGGTGCACTTCGAAAAAGTGGCATGTTGAGTGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATAGCAGCTGGCCCTATTCAACTTGTTTTGGGCACTTTCAAGCAAAACATCACCAACAAAACCAAGAAAAGGAACTCATCTTCTGCTGCTGCCAACATGGCTGATAATCCAGATCACCTGAAGCAGCAACAACAAACTAATGGAGTAGCAGATAAGGTCATTCCTGCAACAACTGAAGTAGTACCAGATTATGTGAATCCTGATGATAACAATGTGCATTCTGATTCTGTTAGTGGTGTTGACTTGGAGTACCAGATCCTTCAGCCTAGCCCAGACCAAAGAACACCTGCAGATGTTGATGTCATTGCTCCTTAG 1029 0.483 MEDLNQNVTFTDSPSPTLNKPQTNYETPVQPNYGENNAALEGVGVENVVSGSVISGAQSQGSEPAVKRGRGRPRKYDVNGNRLSSSATPPPPPGFDIQPYAESVVKRGRGRPRGTGKLQILASMGGYVAETAGGSFIPHVLTVNTGEDVVNKIISFFQKGPRSVCILSATGPVSSVTIRQPGPIGGFLRYEGIFQILSLSGSCTYTGAGGALRKSGMLSVSLAKPDGRVFGGGIESSLIAAGPIQLVLGTFKQNITNKTKKRNSSSAAANMADNPDHLKQQQQTNGVADKVIPATTEVVPDYVNPDDNNVHSDSVSGVDLEYQILQPSPDQRTPADVDVIAP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi834g00001 342 CDD DUF296 138 251 IPR005175 -
Sebi834g00001 342 ProSiteProfiles PPC domain profile profile. 133 272 IPR005175 -
Sebi834g00001 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 252 IPR005175 -
Sebi834g00001 342 SMART AT_hook_2 67 79 IPR017956 GO:0003677
Sebi834g00001 342 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Sebi834g00001 342 MobiDBLite consensus disorder prediction 258 284 - -
Sebi834g00001 342 MobiDBLite consensus disorder prediction 1 36 - -
Sebi834g00001 342 Pfam AT hook motif 106 116 IPR017956 GO:0003677
Sebi834g00001 342 Pfam AT hook motif 67 76 IPR017956 GO:0003677
Sebi834g00001 342 Gene3D - 138 270 - -
Sebi834g00001 342 MobiDBLite consensus disorder prediction 54 97 - -
Sebi834g00001 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 291 IPR039605 GO:0003680
Sebi834g00001 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 260 - -
Sebi834g00001 342 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi834g00001 Sebi-Chr834 33676 37709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi834g00001 66 261 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 45.933 1.97e-50 170