Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi833g00012 ATGGCAAGAGGGTTGAAGAAGCACTTGAAGCGGCTCAATGCCCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCGCCAAAGCCATCATCTGGACCCCATAAATCAAGGGAGTGCCTGCCTTTGATCCTTATTCTGCGAAACAGACTAAAATATGCTCTCACATATAGAGAAGTAATTTCCATCTTAATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACTGACAAGACGTACCCTGCTGGTTTTATGGATGTCGTATCTATTCCTAAGACAAATGAAAATTTCCGTCTTCTTTATGACACAAAGGGTCGGTTCCGTCTCCACTCTGTCAGGGATGATGAGGCAAAG 360 0.4528 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi833g00012 120 FunFam 40S ribosomal protein S4 1 117 - -
Sebi833g00012 120 CDD S4 51 112 - -
Sebi833g00012 120 Pfam Ribosomal family S4e 95 120 IPR013845 -
Sebi833g00012 120 Gene3D - 1 117 IPR036986 GO:0003723
Sebi833g00012 120 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Sebi833g00012 120 SMART s4_6 42 106 IPR002942 GO:0003723
Sebi833g00012 120 Pfam S4 domain 47 90 IPR002942 GO:0003723
Sebi833g00012 120 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 120 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi833g00012 120 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Sebi833g00012 120 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi833g00012 Sebi-Chr833 316759 318535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi833g00012 1 120 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 94.167 1.74e-83 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi833g00012 K02987 - jre:108993916 246.128