Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi82g00065 ATGGCAATGGTTCCTGCTGGGTTCCATACTATTAACAGCCTTTGTGGCCGAAGGCAAATCTGGAGATTGAGAGTCAAAGTTGTTCGCCTTTGGAATATGTGTGTTGTTGCTACTCCAAATGATCCGTTTGCAATGCAAGTGCTCCTTGTGGACGAAGAGGGTGGCCGTATTGAAGCAACTATTAAGAAGCAGAATATGAAGAAGTTTGCCAACTTGTTGGTGGAGGGGCAAGTGTATAAGATAATTGATTTTGGGATCACCTCAAACTTTGGGAAGTTTAGGGCAGCTGGACATGACTACAAGCTCACTTTCAATGGTAGCACGAGGATTATTCCCTTTCCAAACGTGGCCATTCCTTTCCATGGGTTGTCCCTAACCAAAAGTTCTGATATACTCAAAACAAAGGGGCGTTCAGATTATTTAGTTGATTTTATGGGGGTGTTGACTGCTACTTCAGATGAGATGACATTGGTTTCTAAGGATGGAAGGGAAACAAGACTACTTCTGTTGGACCTGGTCGATGAAATGGGGAAGTTACGTTGTGCTATTTTTGGAGATTTCATTGACACCGTTGCTGCGTTTCTATCTCTTCCTCGATGTGGGCTGCCAGTTGTTATTGTCCAACTCGCAAGGGTGAATATTTATAAGGGTGAGGTAGGGATCCAAAATGTTATGAACGCCTCCAAGGTGCTATGGAATCCAGACATTCCAGAAGCAATAGAATTTAAAAATGGCTTGGCTGTGCATGAGGTAGAATCTGAAGTTGATATTGGGATGATCGTTGAGCGAAGAACTATTGTTCCTCTAAGGGAAGATTTCTTGAAACTTACTCGTAGGAAAACAATTAGGGACCTCACAGAGATTGAAGAGGCTGGATGTTATGTTTTGTTAGGCACTGTAACTGAAATCTGTGATGATTCCCTATGGTGGTACATGGCTTGCATATGTTTAAAGTCTGTTAAACATGATGGAGTGACTTATTATTGTCGTGATTGCAACACTCATATGTTCCATGCGACGCCAAGGTATAAGCTAAAGATTGAAGTGACCGATGGAGCCGAACAGGCTAGGTTGGTTATTTTTTATGTTGAGTGCTTCACATTATTCAATCGTGCTTGCAAAGACATGTTGTTGGAGTCCAAGAAACACTCAACTGATCAATGCCCCATTGAGATCACGAGTTTGGTTGGAAAAGAATTCCTTTCCAAAGTGGAAACCAAATTGGACGACTCCATAGCAATTGATGACTGCTATCCAGTTAAGAGGATATGCTTTGACTCCACCATTATTTCTGAATACAAGGCTGAACTCATTATTGAGACACCACTAAAGCAAAAATTTTCACCTGTGTTCCCCACAATTGGGTATGGTGACGGGAGTGCAAGTCTCTGTGATCACAATACCGAATCAACCTCTGTGGTCACTGTGGTTGATGTCAACCCAGACTCTTGTGCGCAATCCTCAAGCACACCACAAGAAGAACCAACCTGCTCTAAACGTCAGGGTGATGATTCAGTGGATGCCCCTGACTTTATTGGTCATGGTTCCATGTTCCCGTTGGAGTCATTAATGTCCAGTAATATTTATAGGTGCCTCGTGGCAACTAAGTATATTCAGGGACATGCTGTGACAGTAGATATTTCGTATCTCACTTATTACCTTTTGGACCCATTTACTGCTACTTCTTCACTGCAGGTGTTGGTTGTCAGCTACCCTGCTCAAGATCTTTTTGCTTCAATGGTGGACGGCAGCCTTCTAGGGGTGCTGATCAAGGACTTGCACCCTGAGTTGGAGGCTTGGTTTATCCGTGTCCATGTGATACGTGTGTGGACTGTTCCTGTATGTACCCGATCCTATCGAGGTTTGTCAGTTGAAATGGTTGTAATGGATGCAGAGGGTTCAAAGATTCAAGCGTCTATTACGAAGGATTTGCTGAGGTTGAAACGCGTTACTTTAGAAGAAAGAGCATTATACCACATCTGTTTTGGGCTTGTGATTCGGAATCAGGGATTTGATCGACCCACCAACCACCCATTTAGACTGATCATCCAGAAAAACTCTGAACTTTATAGGGTGAAGAGGCGTCTCATATCCTCATTGGGTTTATCTCCCGTTTCAACAAGGGATATCTCCACGATGATGACTGACAGAGCTTGTGTTGTTGATCATGTGGGTCTCTTGACAGCGATGACTTGTGAAAGGCAGCATGTGAAGGACGGGAAGACTGTTATTCTGGCTCACTTGGAGTTGACAGACCAAACTGGAAAGATGAAGTGTGTTTTGTACGATGATTATGTTGAAGCAATTGCACAATTTCTTCTATCTAATGGCCCTCGACCTCCAGTGGTGGTTATTCAGTTTGGTCGCATACTTCTTGTAGGGGAACTCATGTTGGGTGGGGGATTCAAAACTACTTTTAATTTTGCAAGAGAGGTTGGTATTGAAACTGTAACCAGTTTAACTAGGGTCCTTTTCAGTCCTGACATGCCCCAGGTCTATGACCTTATCATGTGGTTTAATAGTGGGTTGAGCCTTGAGGGCCAAATCCAATATTTGCCAATTGGTCCACCACCAATGGATATTTGTGAGAAGTTTCTACTTACACACGACAGAGTGGAACTTGGTCAGCTGAATTCACTGACTCAGGATGGAATGTATGTCACATGGGGTTCCATTGTTGGAATGGTTGATAATGAACCTTGGTGGTACTCTTCATGTAAGCACGGCTTAGGACGCTGTTTAATTTGTTCAGCTTACTCCACAGATGGGAGGGTGAATTATCTGCAGAGGTACACCCTTGGCTTGAAAGTTTCGAACCGGAATTGTTCAACCCAATTTGTTTTGGGTGATAACGAAGTGGAAAGACTTATCAACAAACAATGTGCCTCTCTGCTTGGTGAAATTGAGGATCCTTATTCAACGATGTACCCTTCTATTTTCAATCAGTTGATCGGCAAAAACATGTTGTTACAGATAGACAGGTTGTGA 2988 0.4307 MAMVPAGFHTINSLCGRRQIWRLRVKVVRLWNMCVVATPNDPFAMQVLLVDEEGGRIEATIKKQNMKKFANLLVEGQVYKIIDFGITSNFGKFRAAGHDYKLTFNGSTRIIPFPNVAIPFHGLSLTKSSDILKTKGRSDYLVDFMGVLTATSDEMTLVSKDGRETRLLLLDLVDEMGKLRCAIFGDFIDTVAAFLSLPRCGLPVVIVQLARVNIYKGEVGIQNVMNASKVLWNPDIPEAIEFKNGLAVHEVESEVDIGMIVERRTIVPLREDFLKLTRRKTIRDLTEIEEAGCYVLLGTVTEICDDSLWWYMACICLKSVKHDGVTYYCRDCNTHMFHATPRYKLKIEVTDGAEQARLVIFYVECFTLFNRACKDMLLESKKHSTDQCPIEITSLVGKEFLSKVETKLDDSIAIDDCYPVKRICFDSTIISEYKAELIIETPLKQKFSPVFPTIGYGDGSASLCDHNTESTSVVTVVDVNPDSCAQSSSTPQEEPTCSKRQGDDSVDAPDFIGHGSMFPLESLMSSNIYRCLVATKYIQGHAVTVDISYLTYYLLDPFTATSSLQVLVVSYPAQDLFASMVDGSLLGVLIKDLHPELEAWFIRVHVIRVWTVPVCTRSYRGLSVEMVVMDAEGSKIQASITKDLLRLKRVTLEERALYHICFGLVIRNQGFDRPTNHPFRLIIQKNSELYRVKRRLISSLGLSPVSTRDISTMMTDRACVVDHVGLLTAMTCERQHVKDGKTVILAHLELTDQTGKMKCVLYDDYVEAIAQFLLSNGPRPPVVVIQFGRILLVGELMLGGGFKTTFNFAREVGIETVTSLTRVLFSPDMPQVYDLIMWFNSGLSLEGQIQYLPIGPPPMDICEKFLLTHDRVELGQLNSLTQDGMYVTWGSIVGMVDNEPWWYSSCKHGLGRCLICSAYSTDGRVNYLQRYTLGLKVSNRNCSTQFVLGDNEVERLINKQCASLLGEIEDPYSTMYPSIFNQLIGKNMLLQIDRL 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi82g00065 995 Gene3D - 8 115 IPR012340 -
Sebi82g00065 995 MobiDBLite consensus disorder prediction 484 503 - -
Sebi82g00065 995 Gene3D - 588 690 IPR012340 -
Sebi82g00065 995 Gene3D - 864 994 IPR012340 -
Sebi82g00065 995 Gene3D - 272 423 IPR012340 -
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 589 690 IPR012340 -
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 705 843 IPR012340 -
Sebi82g00065 995 CDD RPA1_DBD_B_like 143 243 - -
Sebi82g00065 995 CDD RPA1_DBD_A_like 602 686 - -
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 880 992 IPR012340 -
Sebi82g00065 995 Pfam Replication factor-A C terminal domain 298 409 IPR013955 -
Sebi82g00065 995 CDD RPA1_DBD_C 280 409 IPR047192 -
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 277 411 IPR012340 -
Sebi82g00065 995 PANTHER OS03G0429900 PROTEIN 226 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi82g00065 995 SUPERFAMILY Nucleic acid-binding proteins 124 246 IPR012340 -
Sebi82g00065 995 CDD RPA1_DBD_A_like 22 110 - -
Sebi82g00065 995 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
Sebi82g00065 995 Gene3D - 116 254 IPR012340 -
Sebi82g00065 995 Gene3D - 699 845 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi82g00065 Sebi-Chr82 1211170 1216972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi82g00065 4 351 Core DNA Replication Machinery Family AT2G06510 22.016 1.59e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi82g00065 - - lja:Lj6g3v0884310.1 345.51