Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi82g00061 ATGGTTAGTACAAATTTACTTCAACTGCAGGGCTTCATAAAAGGTTCAGTGGTAAAATGGCCCTTCTCAAATGAAGTCTCTGCTCATCCCCAATTGTTGTCTTTCAATGTTTCAGAAGATGACAAGGCTAAAATGAGGGTGTTTGATTCCATCACATCTGCTGGTTTTTGGCCATCCCAAGAGATGCATTTGACTCTACTCAGAAACGTGCTGGGGCTGAAACTACAGAAATCTTTCAATCATGATGGACATGGTGGCATTCATTTTTCCTTGACTCCGTATCATGTACAACATGATGTGAATTCTGTGAGTCATCCTCATGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCCATGGGACATCCATTCCTAAAGAACCATTCTGTAACTGTTGGTCAGAACATGAATGGTGTTAATATGAAGCAACCACTACTTGGGGGAATACCTGTTACAGCACCTCATTCAGTTCTTCCCATCACTGGGGCTGTTGCTGGAATGACTAAATCATGTGTGAAACCATCTGCACCTGCTCCTAAACTTACCATATTCTATGCGGGTACTGTGAATGTCTTTGATGATATCTCCCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGCTTATCTGCAGCCTCTAACATGGCACAGCCTAAAGTTCAGGCACCCAGCTCAAACTTGGCAGCAGGTGATGGTGTACCTGTGAGTCAGCCTATTAATATACCATCATGCTCTGGTCTTCCAAGTCCTTTATCTGTTTCTTCACACACTGGTGCACAGTCAGGGAGTGGCTCAAGTAGCAATGATGAATTTCTGGCAAGTAAAACATCTGGAGGTCCCACCACTTCTGTTAGTAAAGTGGAGACTCCAAAAGTAGTCAATGCAACAACCATGTTTCCATCAGCTGTACCACAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGTAGCACCATATAACCACAACAAGAAGTATGAGAATGTACCACTGCAGGATACAATGGTTGATAACATCTTTGCAACTACTGAATTTTCATGCAACAATTTTTTCTCGATTGACAACACCCCTGACCCAATTCGTGTTCAATTAGCGATAGTTCATTTAGAGGGTCGTGCTCTTCAATGGCACACAGCCTTATCTAAAACTCTAAATTGTTCTTCTCTGTGTTGGGCGGATTATGCACAGTTGGTAATTGCAAGATTTGGGGATGTTTGTGACGACCCCATGGCTGAGTTGATGAAGCTTCGGCAGAAATCTTCAGTTGTTGAATATCATGAGGAATTTGACTCTATTATCACTCGTTTATCTTTGCCTGAGAATTACACTTTAAGTTGCTTTTTAGGTGGGTTAAAACAAGATATTCAGATGTTGGTAAGAATGTTTAATCCCACTTCTGTTCAGAGAGCTTTCCAATTAGCTCGAATGTATGAAGCTGCCAATGCCCCTACAAGCTTGAGCAATGCTAAGAATGCTGCTGGATCTTCTAACAATTCTGGGATAGTCAAGAATCAGAAAGGTCTATTGGGTGTCAAGCCTGTGTCTGCCCCTAAACCTATTCCTAGTACAAGTTCTCAGAAGGAAACTGCAACTTCTAAGTTCAAGACTGGTAAAACCTTAACCCCAGCCTTTATGAGTGAACGAAGAGCCAATGGGTTGTGCTATTTCTGTGATGAACCGTACTCCCATGAGCATAACTTAACTCACAAGAAACTGCAGGTGCATGTGTTAGAAGTGCTTGAGGACAAGGAAACGGTTGAGGAGCCTAGTGTGCTTGCTGAGTTTTTGGATGCAGACGAATTGCAAATTTCTGTACATGCTTTATCAGGTGTGGCTAATTTCAAAACCATGCATGTTACTGGTCATTATCAAAAGCATCCTGTTCACATTCTAATTGATAGTGGTAGTACCCATAACTTCTTAGACATTGGATTTGCTAAAAGATATGGTTGCAGAATAGAGGATTTGGACCCTATTAATTTGCAAATGGAATTTAAGATCAATGGAAAAAGGCATGTTCTTAGAGGTTCTGCTCAAGGGGGAATTAAAACTATAAGGAAACAGCAGGTTGGGAAAGTTTTAGCTGAGGGAGTCCACTTATCCATGATACATCTTTGTGGAGGGGGAGAAGGATTGTTGCAATCCCTTACTGCTCATGCCAATCAACCCCAGCTGCCTCCTAGGATTGTTGATCTCTTGACTGAATTTGATGATGGGCATGAGAATGTGGTTGTTGATGCATTATCTAGGGTTGAGGAGTTAGAGTGCCATAGTTTGAGTATTTATCAATTGCAGTCTGATTTGGTTGATAAGATCAGGGCTACTTGGTTAACTGATTGGTTGCATTCTTCAGGTGCTAGTGGTCATTCGGGTATTAATGCAACAATGCAAAGAATCAAAGTTGTGCTACATTGGAAGGGTTTAACTACTGATGTGAAGAGCCAGCCTCCTCCCATACATCTCCCTTATCTGCTTGGTCAGTCCAAGATTGAGTTAGTAGATAGAAGTTTGTTTAAGAGAGAAGAGATGTTGAAGATGTTGAAGTTCCACCTCAGAAGAGCCCATGAAAGAATGAAACAACAGGCTGATAAACACAGGACTGACAAGGAGTATCAGATTGGTGATATGGTCCCAGTTTCAAGTGCACTGCCATATCAATCAGAAGATGCGTTGGCAGACAAGGAACCAGAAGCTATCCTAGATAGGATGACAGTTCGAAGGAAGGGAGTAAGAGTGACTAAGGTTTTGGTTAAATGGAAGCATCAATTGGCAGAGGATGCTACCTGGGAGTTTTACTATGATTTGAAGAAGAAGTTCCCATCTTTTCATCCTTGA 2874 0.4186 MVSTNLLQLQGFIKGSVVKWPFSNEVSAHPQLLSFNVSEDDKAKMRVFDSITSAGFWPSQEMHLTLLRNVLGLKLQKSFNHDGHGGIHFSLTPYHVQHDVNSVSHPHDVKMFSVSNQAISVSMGHPFLKNHSVTVGQNMNGVNMKQPLLGGIPVTAPHSVLPITGAVAGMTKSCVKPSAPAPKLTIFYAGTVNVFDDISPEKAQAIMLLAGNGLSAASNMAQPKVQAPSSNLAAGDGVPVSQPINIPSCSGLPSPLSVSSHTGAQSGSGSSSNDEFLASKTSGGPTTSVSKVETPKVVNATTMFPSAVPQARKASLARFLEKRKERVMNVAPYNHNKKYENVPLQDTMVDNIFATTEFSCNNFFSIDNTPDPIRVQLAIVHLEGRALQWHTALSKTLNCSSLCWADYAQLVIARFGDVCDDPMAELMKLRQKSSVVEYHEEFDSIITRLSLPENYTLSCFLGGLKQDIQMLVRMFNPTSVQRAFQLARMYEAANAPTSLSNAKNAAGSSNNSGIVKNQKGLLGVKPVSAPKPIPSTSSQKETATSKFKTGKTLTPAFMSERRANGLCYFCDEPYSHEHNLTHKKLQVHVLEVLEDKETVEEPSVLAEFLDADELQISVHALSGVANFKTMHVTGHYQKHPVHILIDSGSTHNFLDIGFAKRYGCRIEDLDPINLQMEFKINGKRHVLRGSAQGGIKTIRKQQVGKVLAEGVHLSMIHLCGGGEGLLQSLTAHANQPQLPPRIVDLLTEFDDGHENVVVDALSRVEELECHSLSIYQLQSDLVDKIRATWLTDWLHSSGASGHSGINATMQRIKVVLHWKGLTTDVKSQPPPIHLPYLLGQSKIELVDRSLFKREEMLKMLKFHLRRAHERMKQQADKHRTDKEYQIGDMVPVSSALPYQSEDALADKEPEAILDRMTVRRKGVRVTKVLVKWKHQLAEDATWEFYYDLKKKFPSFHP 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi82g00061 957 Pfam tify domain 181 211 IPR010399 -
Sebi82g00061 957 Pfam Jas motif 309 333 IPR018467 -
Sebi82g00061 957 CDD retropepsin_like 632 671 - -
Sebi82g00061 957 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 132 337 IPR040390 -
Sebi82g00061 957 Pfam Retrotransposon gag protein 377 465 IPR005162 -
Sebi82g00061 957 MobiDBLite consensus disorder prediction 251 293 - -
Sebi82g00061 957 SUPERFAMILY Chromo domain-like 897 954 IPR016197 -
Sebi82g00061 957 ProSiteProfiles Tify domain profile. 177 212 IPR010399 -
Sebi82g00061 957 SMART tify_2 177 212 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi82g00061 Sebi-Chr82 1132275 1139628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi82g00061 18 338 Tify Gene Family AT3G17860 36.207 1.41e-32 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Sebi82g00061 Retrotrans_gag 4.9e-11 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi82g00061 K13464 - gmx:100807043 410.223