Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi82g00060 ATGCTTCAAGAGATTCAATTCATTTACAATAACATATCTGGCACTTTACCATCGGATTTGTGTCATGGGGTTCCAATGCTTGAGAAGCTTGACCTCTCTGGGAATGCATTTTCTGGTCAAATTCCATCAAGTTTGCATCAATGTAAAAAGCTCAAATATCTAAAGATGATCAGCAATAGATTTTATGGTCAACTACCAAGTGAAATTGGGAGATTATCTATGCTTCAGGAGTTAGATCTCAGCAACAACAATCTATCAGGTTCACTTCCACCATCTCTTTTCAACATATCTTCTTTAAGACTAATAAATCTTCGGAACAACATGTTTAGTGGTCAACTTCCAGAAGAAATGTGCCAGCAAGCTCACTCACTTCAACAGATTTCTATATTAAACAACAGAGTTGGAGGAACCGTTCCAAGGTCCATTAGCAACTGCACTTCATTGAAGCGCTTATTCCTAGGAGTAAACTTTTTTACAGGTACCATACCCAATGAGATTGGTGACTACTTAAAAAACCTTGAGCAATTGCATTTGCAAGCCAACAATCTTAGTGGAGAAATTCCAAGTAGCCTTTTCAATGCTTCAATGCTTCTTGAATTAGTCCTTGCCAACAATACATTCACAAGAGTTATACCTGACTCAATTGGGAATTTGAGAAACCTTCAGCTTCTTTATCTGATTGGAAACAAGTTGACTAGTGATCCATCTTCTCCAGAGATTAGTTTCCTCTCTTCATTGACAAAGTGTAGACAATTGGAGAAAATTCTGATATCAATGAATCCTTTGAATGGAACACTTCCAAATTCTATTGGAACTTGTCAAACTCTCTTCAAACATTTAATGTTTGGAGTTGTGATGTCAAGTTTTGGTGGGTCTTTGCCAAATGAGATAAGTGGCATGAATGCAGTGATAAAATTGGACATATCAAAGAATCACCTTTCAGGAGAACTTCCAAATGAGATTGGATCCTTGCAAAAGATAATGAATCTCTCATTAGCAAATAATATGTTACAAGGGCCTATTCCTGATTCAGTTGGCAATATGCTAAGCTTGGAATTTTTGGACCTTTCTCATAATCTTTTATCAGGAATCATCCCAAAGTCAATTGAGAAACTTTTTTATCTCAAATTTATCAACTTGTCTTATAATAAACTACAAGGAGAAATCCCTTCTGGTGGCAATTTTGCAAACTTCACAGCTCAATCATTCATGATGAATGATGCACTTTGTGGAAGACCTGAACTAGGAGTCCAACCATGTCCCATTAATGGTACAAAACAGAGAAAAACAGGGAAAAAACTTCTATTGAAATTGATCATACCCTTGATTATTGTGTCTTGCATCTTTGTTGGTTGTGCAATTCTTCTAATATACAAGAGAAAATACAATAAAGCTAGTTCAATTGATGATATAAACTTACCAACATTGCAATTTCCAAGTAGAATTTCTTACCATGAACTTGTTGAGGCAACAAAAAATTTTGATGAGCATAATCTTCTTGGTAAAGGGAGTTTTGGTTCTGTGTACAAAGGTGAGCTTTCTTCAAATGCAATGGTGATTGCAGTTAAAGTATTCAATTTGGAAGTGCAAGAAGGGTCAAGGAGTTTTGATATGGAATGTGAAGCAATGCGCAATCTTCGCCATCGCAATCTAGTTAAAGTCATTACTAGTTGTTCTAATGTTGTTGATTTCAAAGCCATAGTAATGGAATTTGTGCCAAATGGAAGCTTAGAGAAGTGGTTGTATTCTCATAACTATTTCCTGAGTTTTGTTCAAAGGTTGAACATAGCAATAGATATTGCATCTGCCTTGGAGTATCTCCATCATGGTAACTCAAAACCTGTGGTACATTGTGACTTGAAGCCGAGCAATGTTTTGTTGGATGAAAATATGGTAGCTCATGTTTGTGATTTTGGCATATCTAAACTCTTGGAAGAAAAGCAATCACAAATTCATACCAACACTTTGGCAACTCTTGGTTATATTGCACCAGAATATGGATCCAAAGGTGTTGTGTCCATAAAAGGAGATGTGTACAGCTATGGTATTATACTTATGGAAGTATTTACAAGAAAGAAGCCAACTGATGAAATGTTTGTAGAGGGATTAAGTTTAAGGTCATGGATCCAAGATTCAATGCCACATGAGATCATTCAAGTTTTAGACCATAATCTATTGGAGGGAGAGGAACAATTGATTTCTGCTATGGAAGCAGCTTTGTCAAATATCATTGTGTTGGCTTTAAATTGCTCTGCTAACACCCCTGATGAGAGAATGAGTATGGAGGAAGTCTTAAGTCGCTTAAACAAAATCAAAACTGTATTTTTGCAAATGGTAGAAGGAAATTTAAGTTAA 2355 0.3592 MLQEIQFIYNNISGTLPSDLCHGVPMLEKLDLSGNAFSGQIPSSLHQCKKLKYLKMISNRFYGQLPSEIGRLSMLQELDLSNNNLSGSLPPSLFNISSLRLINLRNNMFSGQLPEEMCQQAHSLQQISILNNRVGGTVPRSISNCTSLKRLFLGVNFFTGTIPNEIGDYLKNLEQLHLQANNLSGEIPSSLFNASMLLELVLANNTFTRVIPDSIGNLRNLQLLYLIGNKLTSDPSSPEISFLSSLTKCRQLEKILISMNPLNGTLPNSIGTCQTLFKHLMFGVVMSSFGGSLPNEISGMNAVIKLDISKNHLSGELPNEIGSLQKIMNLSLANNMLQGPIPDSVGNMLSLEFLDLSHNLLSGIIPKSIEKLFYLKFINLSYNKLQGEIPSGGNFANFTAQSFMMNDALCGRPELGVQPCPINGTKQRKTGKKLLLKLIIPLIIVSCIFVGCAILLIYKRKYNKASSIDDINLPTLQFPSRISYHELVEATKNFDEHNLLGKGSFGSVYKGELSSNAMVIAVKVFNLEVQEGSRSFDMECEAMRNLRHRNLVKVITSCSNVVDFKAIVMEFVPNGSLEKWLYSHNYFLSFVQRLNIAIDIASALEYLHHGNSKPVVHCDLKPSNVLLDENMVAHVCDFGISKLLEEKQSQIHTNTLATLGYIAPEYGSKGVVSIKGDVYSYGIILMEVFTRKKPTDEMFVEGLSLRSWIQDSMPHEIIQVLDHNLLEGEEQLISAMEAALSNIIVLALNCSANTPDERMSMEEVLSRLNKIKTVFLQMVEGNLS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi82g00060 784 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 118 423 - -
Sebi82g00060 784 Gene3D Phosphorylase Kinase; domain 1 480 571 - -
Sebi82g00060 784 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 572 780 - -
Sebi82g00060 784 PRINTS Leucine-rich repeat signature 75 88 - -
Sebi82g00060 784 PRINTS Leucine-rich repeat signature 348 361 - -
Sebi82g00060 784 SMART serkin_6 494 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi82g00060 784 PANTHER OS04G0122200 PROTEIN 287 776 - -
Sebi82g00060 784 SUPERFAMILY Protein kinase-like (PK-like) 474 773 IPR011009 -
Sebi82g00060 784 ProSitePatterns Protein kinases ATP-binding region signature. 500 523 IPR017441 GO:0005524
Sebi82g00060 784 Gene3D Ribonuclease Inhibitor 1 420 IPR032675 -
Sebi82g00060 784 SMART LRR_typ_2 170 194 IPR003591 -
Sebi82g00060 784 SMART LRR_typ_2 24 48 IPR003591 -
Sebi82g00060 784 SMART LRR_typ_2 218 243 IPR003591 -
Sebi82g00060 784 SMART LRR_typ_2 348 371 IPR003591 -
Sebi82g00060 784 SMART LRR_typ_2 72 96 IPR003591 -
Sebi82g00060 784 SUPERFAMILY L domain-like 169 414 - -
Sebi82g00060 784 SUPERFAMILY L domain-like 2 246 - -
Sebi82g00060 784 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 21 117 - -
Sebi82g00060 784 ProSiteProfiles Leucine-rich repeat profile. 350 371 IPR001611 GO:0005515
Sebi82g00060 784 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Sebi82g00060 784 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515
Sebi82g00060 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Sebi82g00060 784 FunFam Serine-threonine protein kinase plant-type 475 571 - -
Sebi82g00060 784 Pfam Protein kinase domain 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi82g00060 784 Pfam Leucine Rich Repeat 75 93 IPR001611 GO:0005515
Sebi82g00060 784 Gene3D Transferase(Phosphotransferase) domain 1 572 779 - -
Sebi82g00060 784 ProSiteProfiles Protein kinase domain profile. 494 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi82g00060 784 ProSiteProfiles Leucine-rich repeat profile. 74 96 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi82g00060 Sebi-Chr82 1117050 1121547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi82g00060 10 777 Receptor kinase-like Gene Family AT3G47570 33.218 7.57e-146 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi82g00060 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi82g00060 - K13420 qsa:O6P43_031983 709.523