LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi82g00034	ATGCCTGTTCCTCTTCTGAATGCCCTTGCTGCTAAAGCATGTTACACTGCTTTAGTCTTATTCACAAAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATGTACTTCTGCAAGATGCCCCGCGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTTTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTACCAAAATACAGATTTCAAATATTAAGCAATCCGGAAAAGGCTAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACTACCAGTTGTTACTTGGCAAATGAAAGAATACTTTTACCTGAGGATGCGGAATGTTGTATATGCCTCTGTTCATATGAGGATGGAGTAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAG	633	0.4234	MPVPLLNALAAKACYTALVLFTKRCESINTGVSFLWWMVGFYWVVSGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQILSNPEKASGGAGSMVPIETTSCYLANERILLPEDAECCICLCSYEDGVELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi82g00034	210	SUPERFAMILY	RING/U-box	146	204	-	-
	Sebi82g00034	210	FunFam	E3 ubiquitin protein ligase RIE1	139	207	-	-
	Sebi82g00034	210	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	104	205	IPR013083	-
	Sebi82g00034	210	CDD	RING-H2_PA-TM-RING	158	200	-	-
	Sebi82g00034	210	Pfam	Ring finger domain	158	200	IPR001841	-
	Sebi82g00034	210	SMART	ring_2	159	199	IPR001841	-
	Sebi82g00034	210	ProSiteProfiles	Zinc finger RING-type profile.	159	200	IPR001841	-
	Sebi82g00034	210	PANTHER	TARGET OF ERK KINASE MPK-1	22	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi82g00034	Sebi-Chr82	697237	699856	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi82g00034	20	209	C3H Transcription Factor Family	AT1G68070	78.421	5.83e-113	324

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi82g00034	-		K13148	gmx:100816519	345.51