Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi82g00018 ATGAAGATGGATCACCGGAAACCACAAGACTCATCAAAAACTTCATCTGCTGCTGCAGATTCAGCACGGCAACCCGTCACCGTCACCCCTAACCGCTCCTGTCGCAAAGAAACTGCCAGGGAGAGGGATGAGGTGGAAGCTCAGGATCCAACTGCCGCACGAAAAGTTCAGAAAGCGGACCGCGAGAAACTCAGGAGGGATCGACTCAATGACCATTTTCACGAGCTGGGAAACGCGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATTCTTACTGATGCAATCCAAATGCTAAAGGATTTCACTGAAGAAGTTAATAAGCTGAAAATGGAACATAAAGCACTTTCTGAAGAGTCTCGTGAACTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCTTTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAGTTGACCATTCTGTTGTCATGAGTCCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCCAGTCCAATTTCCATGCACCCATCTCTTCAACCCTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAGTCCCTGTTCAATGTATGTCTCATTCTCAGCTCCAACTAACCCTGCAATTGAGCTGCCATCATCTCAGTATGCTTCTACGTCTCACGCGTCTAACCAGAAAGAGTCCCGAAGCAAGTCACCGGATCATAGAAGGCCTAGTGATGCTGAAAGATGTAGTGATTCTCACGATGTAGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAGCACAACAGGATTCCACTTCTGGTGGAAGGAAGGACAAGCATTCAGCTATGAAGGATAGAATCATCACAGATGGGAGTGCTTCAAGCCGGTATTCATCACCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACACTAACATCCCAAAGGCTGATAATTGA 993 0.4562 MKMDHRKPQDSSKTSSAAADSARQPVTVTPNRSCRKETARERDEVEAQDPTAARKVQKADREKLRRDRLNDHFHELGNALDPDRPRNDKATILTDAIQMLKDFTEEVNKLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAVDHSVVMSPPYSYPVPIPIPPSPISMHPSLQPFPFFGNQNPGHIPSPCSMYVSFSAPTNPAIELPSSQYASTSHASNQKESRSKSPDHRRPSDAERCSDSHDVATELELKMPGSSAQQDSTSGGRKDKHSAMKDRIITDGSASSRYSSPQGLQDSSNSVGDTNIPKADN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi82g00018 330 MobiDBLite consensus disorder prediction 1 69 - -
Sebi82g00018 330 MobiDBLite consensus disorder prediction 224 330 - -
Sebi82g00018 330 Gene3D - 51 132 IPR036638 GO:0046983
Sebi82g00018 330 Coils Coil 93 148 - -
Sebi82g00018 330 MobiDBLite consensus disorder prediction 241 267 - -
Sebi82g00018 330 MobiDBLite consensus disorder prediction 301 330 - -
Sebi82g00018 330 MobiDBLite consensus disorder prediction 224 240 - -
Sebi82g00018 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Sebi82g00018 330 SMART finulus 59 109 IPR011598 GO:0046983
Sebi82g00018 330 CDD bHLH_AtILR3_like 58 132 - -
Sebi82g00018 330 PANTHER TRANSCRIPTION FACTOR BHLH121 11 322 IPR044579 GO:0003700|GO:0006879
Sebi82g00018 330 MobiDBLite consensus disorder prediction 34 69 - -
Sebi82g00018 330 MobiDBLite consensus disorder prediction 12 33 - -
Sebi82g00018 330 Pfam Helix-loop-helix DNA-binding domain 54 102 IPR011598 GO:0046983
Sebi82g00018 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi82g00018 Sebi-Chr82 246241 249122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi82g00018 44 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 54.183 1.57e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi82g00018 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi82g00018 - - gmx:100818281 423.705