Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi829g00004 ATGACGGACGCAGAAGATGCCGTACGACGCCGTAACGCGGTGGCGGAGTATCGGAAGAAACTTCTTCAGCACAAGGAATTGGAATCCAGAGTGCGATCCGTGAGAGAGAATTTGCGAGCTTCAAAAAAAGAGTTCAATAAAACAGAAGATGATTTGAAGTCCCTTCAAAGTGTTGGGCAGATAATTGGCGAAGTTCTCAGGCCTCTTGACAATGAACGCTTGATTGTTAAAGCAAGCAGTGGTCCCAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAATTGACTTCTGGAACTAGAGTGGTTCTTGATATGACAACACTCACCATAATGCGTGCTCTTCCTCGTGAAGTTGATCCAGTAGTGTACAATATGTTGCATGAAGACCCCGGTAATGTCAGTTACTCGGCTGTTGGTGGTTTATCTGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTTCTTCGAGTTGGGATTAAACCTCCGAAGGGTGTTCTGCTTTATGGACCTCCTGGCACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAATATAGATGCTAACTTCCTAAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGATATGCACGTGATCATCAGCCCTGTATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGACCGTGAGATTCAGAGGACACTAATGGAACTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTAGATAGAAAAATAGAAATTCCATTGCCAAATGAACAATCAAGGATGGAAATTCTTAAGATTCATGCTGCTGGAATCGCTAAGCATGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGATTTAATGGGGCTGATCTTCGAAATGTCTGCACGGAAGCTGGAATGTCAGCAATTCGTGCAGAGCGTGATTATGTGATCCACGAAGATTTATGA 1119 0.437 MTDAEDAVRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi829g00004 372 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Sebi829g00004 372 Gene3D - 309 372 - -
Sebi829g00004 372 Gene3D - 128 308 IPR027417 -
Sebi829g00004 372 Coils Coil 24 58 - -
Sebi829g00004 372 SMART AAA_5 171 310 IPR003593 GO:0016887
Sebi829g00004 372 FunFam 26S protease regulatory subunit 10B 128 308 - -
Sebi829g00004 372 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Sebi829g00004 372 FunFam 26S protease regulatory subunit 10B 309 372 - -
Sebi829g00004 372 Gene3D - 23 127 IPR012340 -
Sebi829g00004 372 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 372 - -
Sebi829g00004 372 Pfam AAA+ lid domain 331 370 IPR041569 -
Sebi829g00004 372 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Sebi829g00004 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 372 IPR027417 -
Sebi829g00004 372 FunFam 26S protease regulatory subunit 10B 23 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi829g00004 Sebi-Chr829 14139 17320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi829g00004 138 365 Calmodulin-binding Proteins AT3G56690 40.870 1.07e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi829g00004 K03064 - gmx:100794489 719.153