Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi828g00006 ATGTCGTTGAGGAAGGTCTTTCGCTCTCGTAAATTCTCCAGATCCTTCAAGGAAGTCCAGGCCCTTGACACCGCCGACGACGGCAACCGCCTCGACGCCGCCGGCGACGAAGGCAATGCGTGGTCCAACTTGCTGCCGGAACTTCTCGGGGAGATTATTCGCCGGGTCGACACCGCCGAGGACCAGTGGCCCCACCGCCAAAACGTCGTCTCTTGCGCCTGCGTTTGCAAGCGATGGAGGGACATGACCCGCGAGATCGTAAGGTCTCCTTCTCACAAGGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGACCAACCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACATTTTACCTCTATCTTGCCCTTACACCATCATTCACAGACAAAGGGAAGTTTCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCGTATGTTGGAAAGTTGAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCGCCCCATAGCGGTGCCAAACCATCAAGTGGCAGGGCCAGCCGTCGTTTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTGTCCTGTGACTCCTGTCTCATCAACGGGTGCAAGTTCAGATAGCATGTCTCCAGATGGCCATAAAATGGATGATAAAGAACATGCTACTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCTCCAATTTGGTAAAGTAGCAGATGATACTTTTACCATGGATTATAGGCAACCCTTATCTGCTTTCCAGGCGTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1122 0.4929 MSLRKVFRSRKFSRSFKEVQALDTADDGNRLDAAGDEGNAWSNLLPELLGEIIRRVDTAEDQWPHRQNVVSCACVCKRWRDMTREIVRSPSHKGKITFPSCLKQPGPRDQPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVSSTGASSDSMSPDGHKMDDKEHATSGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi828g00006 373 Pfam F-box domain 41 88 IPR001810 GO:0005515
Sebi828g00006 373 PRINTS Tubby superfamily signature 172 196 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 221 248 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 156 172 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Sebi828g00006 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Sebi828g00006 373 MobiDBLite consensus disorder prediction 254 273 - -
Sebi828g00006 373 Pfam Tub family 102 368 IPR000007 -
Sebi828g00006 373 PANTHER TUBBY-RELATED 12 371 - -
Sebi828g00006 373 CDD F-box_AtTLP-like 41 85 - -
Sebi828g00006 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Sebi828g00006 373 Gene3D - 36 91 - -
Sebi828g00006 373 SUPERFAMILY F-box domain 39 84 IPR036047 GO:0005515
Sebi828g00006 373 Gene3D Tubby Protein; Chain A 97 373 IPR025659 -
Sebi828g00006 373 SUPERFAMILY Tubby C-terminal domain-like 90 373 IPR025659 -
Sebi828g00006 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi828g00006 Sebi-Chr828 136109 141077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi828g00006 1 373 TUB Transcription Factor Family AT1G53320 73.879 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi828g00006 Tub 5.4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi828g00006 K19600 - gmx:100808096 667.922